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| Status |
Public on Sep 13, 2017 |
| Title |
An NF-kB-dependent, lineage specific transcriptional program regulates Treg identity and function [ChIP-seq] |
| Organism |
Mus musculus |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
NF-kB p65 ChIPseq revealed differential binding of p65 in Treg vs Tconv upon TCR stimulation
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| Overall design |
Duplicate of ChIPseq. One input and four samples for each dataset. Samples include conventional T cells (Tconv) with our without CD3/CD28 stimulation and regulatory T cells with or without CD3/CD28 stimulation.
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| Contributor(s) |
Oh H, Grinberg-Bleyer Y, Ghosh S |
| Citation(s) |
28889947 |
| Submission date |
May 25, 2017 |
| Last update date |
Jul 25, 2021 |
| Contact name |
Willey Liao |
| Organization name |
New York Genome Center
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| Department |
Bioinformatics
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| Street address |
101 Avenue of the Americas
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| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10013 |
| Country |
USA |
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| Platforms (1) |
| GPL21103 |
Illumina HiSeq 4000 (Mus musculus) |
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| Samples (10)
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| GSM2641050 |
p65 IP in Tconv, anti-CD3/CD28 stim, rep2 |
| GSM2641051 |
p65 IP in Tconv, unstim, rep1 |
| GSM2641052 |
p65 IP in Tconv, unstim, rep2 |
| GSM2641053 |
p65 IP in Treg, anti-CD3/CD28 stim, rep1 |
| GSM2641054 |
p65 IP in Treg, anti-CD3/CD28 stim, rep2 |
| GSM2641055 |
p65 IP in Treg, unstim, rep1 |
| GSM2641056 |
p65 IP in Treg, unstim, rep2 |
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| This SubSeries is part of SuperSeries: |
| GSE82078 |
An NF-κB-dependent, lineage-specific transcriptional program regulates Treg identity and function |
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| Relations |
| BioProject |
PRJNA388099 |
| SRA |
SRP108064 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE99319_RAW.tar |
2.3 Gb |
(http)(custom) |
TAR (of BW) |
| GSE99319_p65_Tcon_S.pooled_peaks.noBlacklist.idr_conservative.narrowPeak.gz |
150.6 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE99319_p65_Tcon_US.pooled_peaks.noBlacklist.idr_conservative.narrowPeak.gz |
73.1 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE99319_p65_Treg_S.pooled_peaks.noBlacklist.idr_conservative.narrowPeak.gz |
292.8 Kb |
(ftp)(http) |
NARROWPEAK |
| GSE99319_p65_Treg_US.pooled_peaks.noBlacklist.idr_conservative.narrowPeak.gz |
80.1 Kb |
(ftp)(http) |
NARROWPEAK |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
| Processed data are available on Series record |
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