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Sample GSM100169 Query DataSets for GSM100169
Status Public on Dec 15, 2006
Title 3BSA R/P
Sample type RNA
 
Source name 661
Organism Mus musculus
Characteristics stage: E15.5
organ: tibiae
mouse strain: CD1
gender: male and female
Biomaterial provider Charles River
Treatment protocol vehicle: BSA/HCL 1.0 Mm
Growth protocol 6 days in minimal media
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy lipid extraction kit
Label SAPE
Label protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
 
Hybridization protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
Scan protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
Description culture time: 6 days
media: minimal
treatment regime: treat on days 1, 3 and 5
microdissect: day 6
number of tibiae per treatment: 24
Data processing Gene Spring GX
 
Submission date Mar 13, 2006
Last update date Aug 28, 2018
Contact name Claudine James
E-mail(s) claudinegj@hotmail.com, fbeier@uwo.ca
Phone (519)661-3387
Fax (519)850-2459
Organization name University of Western Ontario
Department Physiology and Pharmacology
Lab Frank Beier/ CIHR Group in Skeletal Development and Remodeling
Street address 1151 Richmond Street, Suite 2
City London
State/province Ontario
ZIP/Postal code N6A 5C1
Country Canada
 
Platform ID GPL1261
Series (1)
GSE4481 C-type natriuretic peptide regulates endochondral ossification through p38 MAP kinase-dependent pathways_2
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal intensity value:Raw Data
ABS_CALL Present, marginal or absent call from Affymetrix
DETECTION P-VALUE P-value corresponding to signal intensity value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 205.7 P 0.002275
AFFX-BioB-M_at 296.7 P 0.00141
AFFX-BioB-3_at 151.5 P 0.001248
AFFX-BioC-5_at 582.9 P 0.000127
AFFX-BioC-3_at 716.8 P 0.000044
AFFX-BioDn-5_at 1166.3 P 0.000044
AFFX-BioDn-3_at 2875.4 P 0.00011
AFFX-CreX-5_at 6644.8 P 0.000052
AFFX-CreX-3_at 7604.1 P 0.000044
AFFX-DapX-5_at 267.7 P 0.00011
AFFX-DapX-M_at 1808.2 P 0.00039
AFFX-DapX-3_at 3854.9 P 0.000044
AFFX-LysX-5_at 114 P 0.000195
AFFX-LysX-M_at 490.8 P 0.000581
AFFX-LysX-3_at 1092.8 P 0.000044
AFFX-PheX-5_at 200.3 P 0.000662
AFFX-PheX-M_at 523.9 P 0.00039
AFFX-PheX-3_at 822.7 P 0.000044
AFFX-ThrX-5_at 136 P 0.011384
AFFX-ThrX-M_at 419.9 P 0.00006

Total number of rows: 45101

Table truncated, full table size 1211 Kbytes.




Supplementary file Size Download File type/resource
GSM100169.CEL.gz 6.7 Mb (ftp)(http) CEL
GSM100169.EXP.gz 515 b (ftp)(http) EXP
Raw data provided as supplementary file

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