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Sample GSM100288 Query DataSets for GSM100288
Status Public on Dec 15, 2006
Title 3CNP R/P
Sample type RNA
 
Source name 664
Organism Mus musculus
Characteristics stage: E15.5
organ: tibiae
mouse strain: CD1
gender: male and female
Biomaterial provider Charles River
Treatment protocol CNP at 10exp(-6) M
Growth protocol 6 days in minimal media
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy lipid extraction kit
Label SAPE
Label protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
 
Hybridization protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
Scan protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
Description culture time: 6 days
media: minimal
treatment regime: treat on days 1, 3 and 5
microdissect: day 6
number of tibiae per treatment: 24
Data processing Gene Spring GX
 
Submission date Mar 13, 2006
Last update date Aug 28, 2018
Contact name Claudine James
E-mail(s) claudinegj@hotmail.com, fbeier@uwo.ca
Phone (519)661-3387
Fax (519)850-2459
Organization name University of Western Ontario
Department Physiology and Pharmacology
Lab Frank Beier/ CIHR Group in Skeletal Development and Remodeling
Street address 1151 Richmond Street, Suite 2
City London
State/province Ontario
ZIP/Postal code N6A 5C1
Country Canada
 
Platform ID GPL1261
Series (1)
GSE4481 C-type natriuretic peptide regulates endochondral ossification through p38 MAP kinase-dependent pathways_2
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal intensity value:Raw Data
ABS_CALL Present, marginal or absent call from Affymetrix
DETECTION P-VALUE P-value corresponding to signal intensity value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 175.1 P 0.011384
AFFX-BioB-M_at 267.9 P 0.003595
AFFX-BioB-3_at 159.7 P 0.002023
AFFX-BioC-5_at 548 P 0.000147
AFFX-BioC-3_at 630 P 0.000052
AFFX-BioDn-5_at 991.2 P 0.000044
AFFX-BioDn-3_at 2877.3 P 0.000169
AFFX-CreX-5_at 5710 P 0.000052
AFFX-CreX-3_at 7002.5 P 0.000044
AFFX-DapX-5_at 326.4 P 0.000095
AFFX-DapX-M_at 2604.3 P 0.000169
AFFX-DapX-3_at 5350.7 P 0.000044
AFFX-LysX-5_at 141.8 P 0.000195
AFFX-LysX-M_at 622 P 0.000754
AFFX-LysX-3_at 1626.6 P 0.000044
AFFX-PheX-5_at 234.3 P 0.000446
AFFX-PheX-M_at 678.2 P 0.000258
AFFX-PheX-3_at 992.9 P 0.000095
AFFX-ThrX-5_at 131 P 0.020022
AFFX-ThrX-M_at 565.3 P 0.000081

Total number of rows: 45101

Table truncated, full table size 1215 Kbytes.




Supplementary file Size Download File type/resource
GSM100288.CEL.gz 6.8 Mb (ftp)(http) CEL
GSM100288.EXP.gz 514 b (ftp)(http) EXP
Raw data provided as supplementary file

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