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Sample GSM100324 Query DataSets for GSM100324
Status Public on Dec 15, 2006
Title 2CNP R/P
Sample type RNA
 
Source name 680
Organism Mus musculus
Characteristics stage: E15.5
organ: tibiae
mouse strain: CD1
gender: male and female
Biomaterial provider Charles River
Treatment protocol CNP at 10exp(-6) M
Growth protocol 6 days in minimal media
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy lipid extraction kit
Label SAPE
Label protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
 
Hybridization protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
Scan protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
Description culture time: 6 days
media: minimal
treatment regime: treat on days 1, 3 and 5
microdissect: day 6
number of tibiae per treatment: 24
Data processing Gene Spring GX
 
Submission date Mar 13, 2006
Last update date Aug 28, 2018
Contact name Claudine James
E-mail(s) claudinegj@hotmail.com, fbeier@uwo.ca
Phone (519)661-3387
Fax (519)850-2459
Organization name University of Western Ontario
Department Physiology and Pharmacology
Lab Frank Beier/ CIHR Group in Skeletal Development and Remodeling
Street address 1151 Richmond Street, Suite 2
City London
State/province Ontario
ZIP/Postal code N6A 5C1
Country Canada
 
Platform ID GPL1261
Series (1)
GSE4481 C-type natriuretic peptide regulates endochondral ossification through p38 MAP kinase-dependent pathways_2
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal intensity value:Raw Data
ABS_CALL Present, marginal or absent call from Affymetrix
DETECTION P-VALUE P-value corresponding to signal intensity value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 109.5 P 0.018281
AFFX-BioB-M_at 132.8 P 0.011384
AFFX-BioB-3_at 76.3 P 0.018281
AFFX-BioC-5_at 280.9 P 0.000509
AFFX-BioC-3_at 309.5 P 0.00011
AFFX-BioDn-5_at 492.1 P 0.000044
AFFX-BioDn-3_at 1551.1 P 0.000754
AFFX-CreX-5_at 2969.7 P 0.000052
AFFX-CreX-3_at 3558.8 P 0.000044
AFFX-DapX-5_at 224 P 0.00011
AFFX-DapX-M_at 1893.2 P 0.000258
AFFX-DapX-3_at 3449.3 P 0.000044
AFFX-LysX-5_at 79.9 P 0.000581
AFFX-LysX-M_at 378.9 P 0.001248
AFFX-LysX-3_at 1271 P 0.000044
AFFX-PheX-5_at 149.2 P 0.000972
AFFX-PheX-M_at 433.3 P 0.000662
AFFX-PheX-3_at 711.3 P 0.000095
AFFX-ThrX-5_at 111.9 P 0.01254
AFFX-ThrX-M_at 379.9 P 0.000081

Total number of rows: 45101

Table truncated, full table size 1203 Kbytes.




Supplementary file Size Download File type/resource
GSM100324.CEL.gz 6.6 Mb (ftp)(http) CEL
GSM100324.EXP.gz 392 b (ftp)(http) EXP
Raw data provided as supplementary file

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