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Sample GSM100328 Query DataSets for GSM100328
Status Public on Dec 15, 2006
Title 4BSA H
Sample type RNA
 
Source name 684
Organism Mus musculus
Characteristics stage: E15.5
organ: tibiae
mouse strain: CD1
gender: male and female
Biomaterial provider Charles River
Treatment protocol vehicle: BSA/HCL 1.0 Mm
Growth protocol 6 days in minimal media
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy lipid extraction kit
Label SAPE
Label protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
 
Hybridization protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
Scan protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
Description culture time: 6 days
media: minimal
treatment regime: treat on days 1, 3 and 5
microdissect: day 6
number of tibiae per treatment: 24
Data processing Gene Spring GX
 
Submission date Mar 13, 2006
Last update date Aug 28, 2018
Contact name Claudine James
E-mail(s) claudinegj@hotmail.com, fbeier@uwo.ca
Phone (519)661-3387
Fax (519)850-2459
Organization name University of Western Ontario
Department Physiology and Pharmacology
Lab Frank Beier/ CIHR Group in Skeletal Development and Remodeling
Street address 1151 Richmond Street, Suite 2
City London
State/province Ontario
ZIP/Postal code N6A 5C1
Country Canada
 
Platform ID GPL1261
Series (1)
GSE4481 C-type natriuretic peptide regulates endochondral ossification through p38 MAP kinase-dependent pathways_2
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal intensity value:Raw Data
ABS_CALL Present, marginal or absent call from Affymetrix
DETECTION P-VALUE P-value corresponding to signal intensity value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 88.6 P 0.020022
AFFX-BioB-M_at 114.5 P 0.002556
AFFX-BioB-3_at 45.5 P 0.021902
AFFX-BioC-5_at 275.7 P 0.000147
AFFX-BioC-3_at 292.5 P 0.00006
AFFX-BioDn-5_at 461.1 P 0.000044
AFFX-BioDn-3_at 1411 P 0.000195
AFFX-CreX-5_at 2637 P 0.000044
AFFX-CreX-3_at 3228.8 P 0.000044
AFFX-DapX-5_at 184.6 P 0.00006
AFFX-DapX-M_at 1494.5 P 0.000169
AFFX-DapX-3_at 2564.4 P 0.000044
AFFX-LysX-5_at 72.4 P 0.001102
AFFX-LysX-M_at 385.2 P 0.001102
AFFX-LysX-3_at 799.8 P 0.000044
AFFX-PheX-5_at 125.6 P 0.000972
AFFX-PheX-M_at 303.4 P 0.000662
AFFX-PheX-3_at 558.4 P 0.000095
AFFX-ThrX-5_at 92.4 P 0.036569
AFFX-ThrX-M_at 307.1 P 0.000081

Total number of rows: 45101

Table truncated, full table size 1206 Kbytes.




Supplementary file Size Download File type/resource
GSM100328.CEL.gz 6.6 Mb (ftp)(http) CEL
GSM100328.EXP.gz 506 b (ftp)(http) EXP
Raw data provided as supplementary file

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