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Sample GSM1003286 Query DataSets for GSM1003286
Status Public on Jan 01, 2015
Title DW307_WT_M
Sample type RNA
 
Source name 5091212024_E
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype/variation: WT
gender: Male
age: embryonic day 15
tissue: frontal cortex
Treatment protocol Mouse frontal cortex was sampled from embryonic day 15 transgenic animals and littermates control using disecction kits.
Growth protocol Mice harboring a Cyfip1 spanning BAC clone (RP24-333C15) were generated in the UCLA transgenic core (http://tmc.ctrl.ucla.edu/tg-core/) by injection into C57BL/6J pronuclei. Transgenic mice were identified by PCR screening of tail derived DNA.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from embryonic day 15 frontal cortex from transgenic animals (n=3) and littermates controls (n=3) using the Qiagen RNeasy Kit. RNA quantity and quality was assessed using a Nanodrop (Nanodrop Technologies) and the Agilent Bioanalyzer (Agilent Technologies), respectively. Total RNA (200ng) was amplified, biotinylated and hybridized on Illumina Mouse ref-8 v2.0 BeadChip arrays, querying the expression of ~25,600 well-annotated Refseq transcripts, as per manufacturer's protocol.
Label Biotin
Label protocol Biotin
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Data processing BeadStudio, quantile normalization
 
Submission date Sep 13, 2012
Last update date Jan 01, 2015
Contact name Giovanni Coppola
E-mail(s) gcoppola@ucla.edu
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE40852 Overexpression of disease-associated CYFIP1 alters cellular and synaptic morphology through mTOR dysregulation of mTOR signaling

Data table header descriptions
ID_REF
VALUE Log2 transformed, quantile normalized expresssion levels

Data table
ID_REF VALUE
ILMN_1212607 7.020936518
ILMN_1212612 10.29112832
ILMN_1212619 6.698749011
ILMN_1212628 6.881105511
ILMN_1212632 8.162140526
ILMN_1212636 11.71188059
ILMN_1212637 9.423533604
ILMN_1212645 8.412551138
ILMN_1212648 9.521827897
ILMN_1212653 8.750505262
ILMN_1212672 8.666703195
ILMN_1212682 6.975752203
ILMN_1212683 6.799055858
ILMN_1212685 6.732137705
ILMN_1212692 6.861719639
ILMN_1212693 7.06567068
ILMN_1212695 6.729522618
ILMN_1212698 6.649216868
ILMN_1212702 14.43500717
ILMN_1212703 7.485321057

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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