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Sample GSM1003287 Query DataSets for GSM1003287
Status Public on Jan 01, 2015
Title DW83_WT_M
Sample type RNA
 
Source name 5091212024_F
Organism Mus musculus
Characteristics strain: C57BL/6J
genotype/variation: WT
gender: Male
age: embryonic day 15
tissue: frontal cortex
Treatment protocol Mouse frontal cortex was sampled from embryonic day 15 transgenic animals and littermates control using disecction kits.
Growth protocol Mice harboring a Cyfip1 spanning BAC clone (RP24-333C15) were generated in the UCLA transgenic core (http://tmc.ctrl.ucla.edu/tg-core/) by injection into C57BL/6J pronuclei. Transgenic mice were identified by PCR screening of tail derived DNA.
Extracted molecule total RNA
Extraction protocol Total RNA was isolated from embryonic day 15 frontal cortex from transgenic animals (n=3) and littermates controls (n=3) using the Qiagen RNeasy Kit. RNA quantity and quality was assessed using a Nanodrop (Nanodrop Technologies) and the Agilent Bioanalyzer (Agilent Technologies), respectively. Total RNA (200ng) was amplified, biotinylated and hybridized on Illumina Mouse ref-8 v2.0 BeadChip arrays, querying the expression of ~25,600 well-annotated Refseq transcripts, as per manufacturer's protocol.
Label Biotin
Label protocol Biotin
 
Hybridization protocol Illumina protocol
Scan protocol Illumina protocol
Data processing BeadStudio, quantile normalization
 
Submission date Sep 13, 2012
Last update date Jan 01, 2015
Contact name Giovanni Coppola
E-mail(s) gcoppola@ucla.edu
Phone 310-794-4172
Organization name UCLA
Department Psychiatry and Neurology
Lab Neurogenetics
Street address 1524 Gonda, 695 Charles Young Drive South
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL6885
Series (1)
GSE40852 Overexpression of disease-associated CYFIP1 alters cellular and synaptic morphology through mTOR dysregulation of mTOR signaling

Data table header descriptions
ID_REF
VALUE Log2 transformed, quantile normalized expresssion levels

Data table
ID_REF VALUE
ILMN_1212607 6.773798151
ILMN_1212612 9.244710129
ILMN_1212619 6.597463641
ILMN_1212628 7.017197383
ILMN_1212632 7.677000043
ILMN_1212636 11.77280799
ILMN_1212637 9.320015647
ILMN_1212645 7.074777373
ILMN_1212648 9.118348335
ILMN_1212653 9.385974118
ILMN_1212672 8.855783017
ILMN_1212682 7.084664865
ILMN_1212683 6.624432159
ILMN_1212685 6.726633897
ILMN_1212692 6.873703044
ILMN_1212693 7.482761381
ILMN_1212695 6.778556479
ILMN_1212698 6.567996668
ILMN_1212702 14.62523663
ILMN_1212703 7.470902747

Total number of rows: 25697

Table truncated, full table size 624 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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