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Sample GSM100329 Query DataSets for GSM100329
Status Public on Dec 15, 2006
Title 4BSA M
Sample type RNA
 
Source name 685
Organism Mus musculus
Characteristics stage: E15.5
organ: tibiae
mouse strain: CD1
gender: male and female
Biomaterial provider Charles River
Treatment protocol vehicle: BSA/HCL 1.0 Mm
Growth protocol 6 days in minimal media
Extracted molecule total RNA
Extraction protocol Qiagen RNeasy lipid extraction kit
Label SAPE
Label protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
 
Hybridization protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
Scan protocol According to standard protocols used in London Regional Genomics Facility. Ontario, Canada
Description culture time: 6 days
media: minimal
treatment regime: treat on days 1, 3 and 5
microdissect: day 6
number of tibiae per treatment: 24
Data processing Gene Spring GX
 
Submission date Mar 13, 2006
Last update date Aug 28, 2018
Contact name Claudine James
E-mail(s) claudinegj@hotmail.com, fbeier@uwo.ca
Phone (519)661-3387
Fax (519)850-2459
Organization name University of Western Ontario
Department Physiology and Pharmacology
Lab Frank Beier/ CIHR Group in Skeletal Development and Remodeling
Street address 1151 Richmond Street, Suite 2
City London
State/province Ontario
ZIP/Postal code N6A 5C1
Country Canada
 
Platform ID GPL1261
Series (1)
GSE4481 C-type natriuretic peptide regulates endochondral ossification through p38 MAP kinase-dependent pathways_2
Relations
Reanalyzed by GSE119085

Data table header descriptions
ID_REF
VALUE Signal intensity value:Raw Data
ABS_CALL Present, marginal or absent call from Affymetrix
DETECTION P-VALUE P-value corresponding to signal intensity value

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 175.8 P 0.046482
AFFX-BioB-M_at 159.3 P 0.013811
AFFX-BioB-3_at 79.8 A 0.216524
AFFX-BioC-5_at 470.6 P 0.001593
AFFX-BioC-3_at 410 P 0.000225
AFFX-BioDn-5_at 734.6 P 0.000044
AFFX-BioDn-3_at 2179.1 P 0.002275
AFFX-CreX-5_at 4438.2 P 0.000052
AFFX-CreX-3_at 5291.7 P 0.000044
AFFX-DapX-5_at 269.9 P 0.000147
AFFX-DapX-M_at 1313.7 P 0.000857
AFFX-DapX-3_at 2822.2 P 0.000052
AFFX-LysX-5_at 58.9 P 0.01667
AFFX-LysX-M_at 298 P 0.00762
AFFX-LysX-3_at 770.2 P 0.000044
AFFX-PheX-5_at 113.8 P 0.01667
AFFX-PheX-M_at 247.5 P 0.00141
AFFX-PheX-3_at 545.9 P 0.000195
AFFX-ThrX-5_at 140.3 A 0.095667
AFFX-ThrX-M_at 289.9 P 0.000581

Total number of rows: 45101

Table truncated, full table size 1222 Kbytes.




Supplementary file Size Download File type/resource
GSM100329.CEL.gz 7.0 Mb (ftp)(http) CEL
GSM100329.EXP.gz 509 b (ftp)(http) EXP
Raw data provided as supplementary file

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