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Sample GSM1004353 Query DataSets for GSM1004353
Status Public on Mar 04, 2014
Title Brain sample 123
Sample type RNA
 
Source name Mouse Brain
Organism Mus musculus
Characteristics Sex: M
cage: 23
maternal diet: HF
diet: HF
weight (g) 3 weeks: 11.7
weight (g) weaning: 30.85
glucose (mg/dl): 165
tissue: brain
genetic background: C57BL\6
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in Beadstudio
 
Submission date Sep 14, 2012
Last update date Mar 04, 2014
Contact name James Hester
Organization name Cleveland Clinic
Department Genomic Medicine
Lab Serre Lab
Street address 9500 Euclid Avenue
City Cleveland
State/province Ohio
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (2)
GSE40897 Genome-wide analysis of brain gene expression induced by maternal diet
GSE40903 Genome-wide analysis of expression in various tissues in response to maternal diet

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 76.6 0.27694
ILMN_2707227 93.4 0.04511
ILMN_2896528 2629.9 0
ILMN_2721178 509.8 0
ILMN_1227723 217.1 0
ILMN_3033922 891.2 0
ILMN_3092673 3631.2 0
ILMN_2730714 2298.6 0
ILMN_3162224 1248.8 0
ILMN_2816356 101.3 0.02256
ILMN_2808939 683.8 0
ILMN_2634564 377.7 0
ILMN_1216623 516 0
ILMN_1215157 661 0
ILMN_1228777 89.8 0.07018
ILMN_2737647 78.2 0.2406
ILMN_1216425 63.1 0.82581
ILMN_2734484 671.5 0
ILMN_2652961 67.6 0.61028
ILMN_2952292 98.5 0.02882

Total number of rows: 25697

Table truncated, full table size 601 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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