NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1004405 Query DataSets for GSM1004405
Status Public on Mar 04, 2014
Title Heart sample 182
Sample type RNA
 
Source name Mouse Heart
Organism Mus musculus
Characteristics tissue: heart
Sex: M
cage: 21
maternal diet: HF
diet: HF
weight (g) 3 weeks: 11.48
weight (g) weaning: 30.22
glucose (mg/dl): 181
length (mm): 102
bmi: 0.290465206
genetic background: C57BL\6
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in Beadstudio
 
Submission date Sep 14, 2012
Last update date Mar 04, 2014
Contact name James Hester
Organization name Cleveland Clinic
Department Genomic Medicine
Lab Serre Lab
Street address 9500 Euclid Avenue
City Cleveland
State/province Ohio
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (2)
GSE40898 Genome-wide analysis of heart gene expression induced by maternal diet
GSE40903 Genome-wide analysis of expression in various tissues in response to maternal diet

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 93.6 0.01253
ILMN_2707227 164.6 0
ILMN_2896528 2765.9 0
ILMN_2721178 460.3 0
ILMN_1227723 328.9 0
ILMN_3033922 653.4 0
ILMN_3092673 1873.5 0
ILMN_2730714 2689.9 0
ILMN_3162224 1028.6 0
ILMN_2816356 90.7 0.02005
ILMN_2808939 149.2 0
ILMN_2634564 235 0
ILMN_1216623 232.7 0
ILMN_1215157 300.5 0
ILMN_1228777 67.3 0.41228
ILMN_2737647 92.2 0.01754
ILMN_1216425 68.3 0.35338
ILMN_2734484 515.2 0
ILMN_2652961 60.8 0.79449
ILMN_2952292 78.5 0.08271

Total number of rows: 25697

Table truncated, full table size 607 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap