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Sample GSM1004420 Query DataSets for GSM1004420
Status Public on Mar 04, 2014
Title Liver sample 23
Sample type RNA
 
Source name Mouse Liver
Organism Mus musculus
Characteristics tissue: liver
Sex: M
cage: 14
maternal diet: LF
diet: HF
weight (g) 3 weeks: 8.53
weight (g) weaning: 27.35
glucose (mg/dl): 187
length (mm): 99
bmi: 0.279053158
genetic background: C57BL\6
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in Beadstudio
 
Submission date Sep 14, 2012
Last update date Mar 04, 2014
Contact name James Hester
Organization name Cleveland Clinic
Department Genomic Medicine
Lab Serre Lab
Street address 9500 Euclid Avenue
City Cleveland
State/province Ohio
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (2)
GSE40899 Genome-wide analysis of liver gene expression induced by maternal diet
GSE40903 Genome-wide analysis of expression in various tissues in response to maternal diet

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 58.8 0.77569
ILMN_2707227 3105.1 0
ILMN_2896528 1730.1 0
ILMN_2721178 455.9 0
ILMN_1227723 218.4 0
ILMN_3033922 751.2 0
ILMN_3092673 3727.5 0
ILMN_2730714 2921.9 0
ILMN_3162224 893.3 0
ILMN_2816356 83 0.00627
ILMN_2808939 954 0
ILMN_2634564 243.5 0
ILMN_1216623 308.3 0
ILMN_1215157 397.6 0
ILMN_1228777 56.2 0.91604
ILMN_2737647 75.4 0.04386
ILMN_1216425 57.8 0.84461
ILMN_2734484 240.8 0
ILMN_2652961 64 0.41353
ILMN_2952292 97.9 0

Total number of rows: 25697

Table truncated, full table size 601 Kbytes.




Supplementary data files not provided
Raw data not provided for this record
Processed data included within Sample table

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