GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1004439 Query DataSets for GSM1004439
Status Public on Mar 04, 2014
Title Liver sample 174
Sample type RNA
Source name Mouse Liver
Organism Mus musculus
Characteristics tissue: liver
Sex: M
cage: 20
maternal diet: HF
diet: HF
weight (g) 3 weeks: 12.59
weight (g) weaning: 34.06
glucose (mg/dl): 271
length (mm): 104
bmi: 0.314903846
genetic background: C57BL\6
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in Beadstudio
Submission date Sep 14, 2012
Last update date Mar 04, 2014
Contact name James Hester
Organization name Cleveland Clinic
Department Genomic Medicine
Lab Serre Lab
Street address 9500 Euclid Avenue
City Cleveland
State/province Ohio
ZIP/Postal code 44195
Country USA
Platform ID GPL6885
Series (2)
GSE40899 Genome-wide analysis of liver gene expression induced by maternal diet
GSE40903 Genome-wide analysis of expression in various tissues in response to maternal diet

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 64.2 0.43985
ILMN_2707227 2893 0
ILMN_2896528 1666 0
ILMN_2721178 400.7 0
ILMN_1227723 237.6 0
ILMN_3033922 836.7 0
ILMN_3092673 3541.1 0
ILMN_2730714 2952 0
ILMN_3162224 812.3 0
ILMN_2816356 74.8 0.05013
ILMN_2808939 992.8 0
ILMN_2634564 307.4 0
ILMN_1216623 344.5 0
ILMN_1215157 435.1 0
ILMN_1228777 63.1 0.50125
ILMN_2737647 66.2 0.33333
ILMN_1216425 64.5 0.42607
ILMN_2734484 199.3 0
ILMN_2652961 64 0.45865
ILMN_2952292 99 0

Total number of rows: 25697

Table truncated, full table size 602 Kbytes.

Supplementary data files not provided
Raw data not provided for this record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap