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Sample GSM1004451 Query DataSets for GSM1004451
Status Public on Mar 04, 2014
Title Liver sample 227
Sample type RNA
 
Source name Mouse Liver
Organism Mus musculus
Characteristics tissue: liver
Sex: M
cage: 12
maternal diet: HF
diet: LF
weight (g) 3 weeks: 10.61
weight (g) weaning: 20.38
glucose (mg/dl): 203
length (mm): 95
bmi: 0.225817175
genetic background: C57BL\6
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in Beadstudio
 
Submission date Sep 14, 2012
Last update date Mar 04, 2014
Contact name James Hester
Organization name Cleveland Clinic
Department Genomic Medicine
Lab Serre Lab
Street address 9500 Euclid Avenue
City Cleveland
State/province Ohio
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (2)
GSE40899 Genome-wide analysis of liver gene expression induced by maternal diet
GSE40903 Genome-wide analysis of expression in various tissues in response to maternal diet

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 64.3 0.36717
ILMN_2707227 3727.5 0
ILMN_2896528 1792.9 0
ILMN_2721178 432.1 0
ILMN_1227723 238.2 0
ILMN_3033922 792.7 0
ILMN_3092673 3215.5 0
ILMN_2730714 2904.4 0
ILMN_3162224 707.9 0
ILMN_2816356 76.3 0.01629
ILMN_2808939 863.4 0
ILMN_2634564 253.8 0
ILMN_1216623 300.5 0
ILMN_1215157 407.4 0
ILMN_1228777 63.3 0.44612
ILMN_2737647 66.6 0.23559
ILMN_1216425 57.1 0.88095
ILMN_2734484 251.3 0
ILMN_2652961 58.5 0.78571
ILMN_2952292 99.2 0

Total number of rows: 25697

Table truncated, full table size 599 Kbytes.




Supplementary data files not provided
Raw data not provided for this record
Processed data included within Sample table

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