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Sample GSM1004502 Query DataSets for GSM1004502
Status Public on Mar 04, 2014
Title Pancreas sample 99
Sample type RNA
 
Source name Mouse Pancreas
Organism Mus musculus
Characteristics tissue: pancreas
Sex: M
cage: 4
maternal diet: LF
diet: HF
weight (g) 3 weeks: 11.1
weight (g) weaning: 32.6
glucose (mg/dl): 277
length (mm): 103
bmi: 0.307286266
genetic background: C57BL\6
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in Beadstudio
 
Submission date Sep 14, 2012
Last update date Mar 04, 2014
Contact name James Hester
Organization name Cleveland Clinic
Department Genomic Medicine
Lab Serre Lab
Street address 9500 Euclid Avenue
City Cleveland
State/province Ohio
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (2)
GSE40901 Genome-wide analysis of pancreas gene expression induced by maternal diet
GSE40903 Genome-wide analysis of expression in various tissues in response to maternal diet

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 61.3 0.30201
ILMN_2707227 69.2 0.05388
ILMN_2896528 612.3 0
ILMN_2721178 190.2 0
ILMN_1227723 340.2 0
ILMN_3033922 194.5 0
ILMN_3092673 487.8 0
ILMN_2730714 601.9 0
ILMN_3162224 220.1 0
ILMN_2816356 64.6 0.15539
ILMN_2808939 95.3 0.00125
ILMN_2634564 118.3 0
ILMN_1216623 128.1 0
ILMN_1215157 170.6 0
ILMN_1228777 65.1 0.1416
ILMN_2737647 62.4 0.23308
ILMN_1216425 65.8 0.12155
ILMN_2734484 116.9 0
ILMN_2652961 61 0.33459
ILMN_2952292 65.9 0.11779

Total number of rows: 25697

Table truncated, full table size 623 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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