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Sample GSM1004548 Query DataSets for GSM1004548
Status Public on Mar 04, 2014
Title White adipose tissue sample 122
Sample type RNA
 
Source name Mouse WAT
Organism Mus musculus
Characteristics tissue: White adipose tissue
Sex: M
cage: 23
maternal diet: HF
diet: HF
weight (g) 3 weeks: 9.38
weight (g) weaning: 29.58
glucose (mg/dl): 238
length (mm): 101
bmi: 0.289971571
genetic background: C57BL\6
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Data processing The data were normalised using quantile normalisation in Beadstudio
 
Submission date Sep 14, 2012
Last update date Mar 04, 2014
Contact name James Hester
Organization name Cleveland Clinic
Department Genomic Medicine
Lab Serre Lab
Street address 9500 Euclid Avenue
City Cleveland
State/province Ohio
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (2)
GSE40902 Genome-wide analysis of white adipose tissue gene expression induced by maternal diet
GSE40903 Genome-wide analysis of expression in various tissues in response to maternal diet

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1248788 62.3 0.80075
ILMN_2707227 499.7 0
ILMN_2896528 3299 0
ILMN_2721178 750.5 0
ILMN_1227723 303.9 0
ILMN_3033922 2369.1 0
ILMN_3092673 8579 0
ILMN_2730714 3726.6 0
ILMN_3162224 1317.2 0
ILMN_2816356 125.9 0.00501
ILMN_2808939 313.4 0
ILMN_2634564 367.7 0
ILMN_1216623 572 0
ILMN_1215157 624.7 0
ILMN_1228777 67.5 0.56642
ILMN_2737647 76.8 0.25439
ILMN_1216425 64.2 0.70677
ILMN_2734484 1161 0
ILMN_2652961 69.9 0.44987
ILMN_2952292 110.8 0.01504

Total number of rows: 25697

Table truncated, full table size 604 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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