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Sample GSM1006262 Query DataSets for GSM1006262
Status Public on Nov 08, 2013
Title Ad Libitum 8
Sample type RNA
 
Source name Ad Libitum 8
Organism Mus musculus
Characteristics tissue: Liver
strain: C57BL6/J
age: 8 months
tissue: Liver
Sex: Male
protocol: Ad Libitum
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from 25 mg of liver in each sample using Qiagen Rneasy kit following manufacturer’s protocol. RNA quantity was assessed by Nanodrop and RNA quality was assessed by Agilent Bioanalyzer.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion kit- Illumina TotalPrep RNA Amplification Kit
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description AL 8
Data processing Data was processed in R by log2 transformation and z-normalization
 
Submission date Sep 19, 2012
Last update date Nov 08, 2013
Contact name Wilson Chun Yim Fok
E-mail(s) wilson.fok@wustl.edu
Organization name Washington University in St. Louis
Department Hematology
Street address 660 S Euclid Ave
City Saint Louis
State/province MO
ZIP/Postal code 63110
Country USA
 
Platform ID GPL6885
Series (1)
GSE40977 Combined treatment of rapamycin and dietary restriction has a larger effect on the transcriptome and metabolome of liver

Data table header descriptions
ID_REF
VALUE log2 transformation and z-normalization
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1250052 -0.320463483 0.05138
ILMN_3122480 -0.519513254 0.63158
ILMN_2599935 0.326684268 0
ILMN_2675543 -0.41856888 0.29449
ILMN_2686883 -0.536189216 0.68922
ILMN_2751818 -0.431075094 0.33584
ILMN_2728634 -0.369825413 0.14035
ILMN_3040515 -0.398014529 0.22932
ILMN_2711608 -0.361893211 0.12531
ILMN_1232875 -0.383165078 0.1792
ILMN_1258507 -0.500103602 0.54762
ILMN_2746142 -0.643174323 0.92607
ILMN_1253709 0.108157324 0
ILMN_1231129 2.438842329 0
ILMN_2711788 -0.623287877 0.88847
ILMN_2707099 -0.317921665 0.04511
ILMN_2942000 -0.472296387 0.46867
ILMN_2642403 1.249718785 0
ILMN_2935636 -0.432472868 0.33835
ILMN_1242024 -0.266982728 0.01128

Total number of rows: 25697

Table truncated, full table size 795 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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