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Sample GSM1006843 Query DataSets for GSM1006843
Status Public on Jul 29, 2013
Title brain_control_rep2
Sample type RNA
Source name 25 weeks, young control
Organism Mus musculus
Characteristics tissue: brain
strain: C57BL/6JRj
genotype: wildtype
age: 25 weeks
mouse id: 30210294-3
Treatment protocol Male C57BL6/J Rj mice were obtained from Janvier (France) and were randomly assigned to rapamycin or vehicle treatment groups. We had three treatment cohorts, distinguished by age of treatment onset. Treatment was initiated in young adulthood (i.e., at approx. 4 months of age), in midlife (i.e., at 13 months of age) or late in life (i.e., at 20-22 months of age). Animals were treated for >12 months before analyses started at 16 months, 25 months and 34 months of age, respectively. Animals were kept on their respective diet for the entirety of the study. In all cases, the experimenter was blinded to the animal group assignments.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
Submission date Sep 20, 2012
Last update date Jul 29, 2013
Contact name Martin Irmler
Organization name Helmholtz Zentrum M√ľnchen GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
Platform ID GPL6885
Series (1)
GSE41018 Rapamycin extends life span, but has limited effects on aging in mice

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1180.862 0
ILMN_2721178 300.3236 0
ILMN_3033922 485.2722 0
ILMN_3092673 2286.718 0
ILMN_2816356 3.211703 0.2280702
ILMN_2808939 410.3528 0
ILMN_2634564 158.0083 0
ILMN_2737647 5.979165 0.1353384
ILMN_2734484 116.3193 0
ILMN_2952292 15.24368 0.02255639
ILMN_2699078 -4.292398 0.7330827
ILMN_1213681 119.7702 0
ILMN_2735413 0.9073448 0.3496241
ILMN_2735415 0.5684537 0.3759398
ILMN_2891688 225.3201 0
ILMN_2637698 644.9407 0
ILMN_2674228 78.115 0
ILMN_2601546 7.812518 0.09774436
ILMN_1230831 14.09308 0.02506266
ILMN_2848071 11.77006 0.04511278

Total number of rows: 25697

Table truncated, full table size 733 Kbytes.

Supplementary data files not provided
Processed data included within Sample table
Raw data are available on Series record

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