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Sample GSM101220 Query DataSets for GSM101220
Status Public on Jun 07, 2006
Title GV milrinone repl2
Sample type RNA
 
Source name GV oocytes
Organism Mus musculus
Characteristics GV oocytes from superovulated CF1 females, cultured in 2.5 ?M milrinone for 48h
Extracted molecule total RNA
Extraction protocol RNA was extracted from oocytes using Absolutely RNA oprep Kit (Stratagene)
Label biotin
Label protocol 15 µg of biotinylated fragmented cRNA was hybridized to each chip
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description GV oocytes
Data processing Affymetrix and Expressionist
 
Submission date Mar 21, 2006
Last update date Jun 07, 2006
Contact name Mareike Puschendorf
E-mail(s) mareike.puschendorf@fmi.ch
Organization name Friedrich Miescher Institute for Biomedical Research
Street address Maulbeerstrasse 66
City Basel
ZIP/Postal code 4058
Country Switzerland
 
Platform ID GPL1261
Series (1)
GSE4508 Abundant transcripts from retrotransposons are unstable in fully-grown mouse oocytes

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE gcRMA
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
AFFX-BioB-5_at 471.57013 7.01E-05
AFFX-BioB-M_at 848.15466 4.43E-05
AFFX-BioB-3_at 530.08856 7.00E-05
AFFX-BioC-5_at 1365.4479 4.43E-05
AFFX-BioC-3_at 1530.4518 4.43E-05
AFFX-BioDn-5_at 3364.5256 4.43E-05
AFFX-BioDn-3_at 4380.0493 4.43E-05
AFFX-CreX-5_at 7981.2393 5.17E-05
AFFX-CreX-3_at 11192.21 4.43E-05
AFFX-DapX-5_at 0.64557153
AFFX-DapX-M_at 0.73717344
AFFX-DapX-3_at 0.07268236
AFFX-LysX-5_at 0.5593742
AFFX-LysX-M_at 0.7609373
AFFX-LysX-3_at 0.10216513
AFFX-PheX-5_at 0.94578665
AFFX-PheX-M_at 0.9370707
AFFX-PheX-3_at 0.21652414
AFFX-ThrX-5_at 0.54458755
AFFX-ThrX-M_at 0.794288

Total number of rows: 45101

Table truncated, full table size 1167 Kbytes.




Supplementary data files not provided

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