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Sample GSM101221 Query DataSets for GSM101221
Status Public on Jun 07, 2006
Title GV milrinone repl3
Sample type RNA
 
Source name GV oocytes
Organism Mus musculus
Characteristics GV oocytes from superovulated CF1 females, cultured in 2.5 ?M milrinone for 48h
Extracted molecule total RNA
Extraction protocol RNA was extracted from oocytes using Absolutely RNA oprep Kit (Stratagene)
Label biotin
Label protocol 15 µg of biotinylated fragmented cRNA was hybridized to each chip
 
Hybridization protocol standard Affymetrix procedures
Scan protocol standard Affymetrix procedures
Description GV oocytes
Data processing Affymetrix and Expressionist
 
Submission date Mar 21, 2006
Last update date Jun 07, 2006
Contact name Mareike Puschendorf
E-mail(s) mareike.puschendorf@fmi.ch
Organization name Friedrich Miescher Institute for Biomedical Research
Street address Maulbeerstrasse 66
City Basel
ZIP/Postal code 4058
Country Switzerland
 
Platform ID GPL1261
Series (1)
GSE4508 Abundant transcripts from retrotransposons are unstable in fully-grown mouse oocytes

Data table header descriptions
ID_REF Affymetrix probe set ID
VALUE gcRMA
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE DETECTION P-VALUE
AFFX-BioB-5_at 410.54602 8.14E-05
AFFX-BioB-M_at 745.5146 4.43E-05
AFFX-BioB-3_at 491.76755 5.17E-05
AFFX-BioC-5_at 1280.9336 4.43E-05
AFFX-BioC-3_at 1400.3484 4.43E-05
AFFX-BioDn-5_at 2934.4053 4.43E-05
AFFX-BioDn-3_at 3972.2556 4.43E-05
AFFX-CreX-5_at 7639.546 5.17E-05
AFFX-CreX-3_at 10693.939 4.43E-05
AFFX-DapX-5_at 0.09566692
AFFX-DapX-M_at 0.38259923
AFFX-DapX-3_at 0.23906273
AFFX-LysX-5_at 0.4259623
AFFX-LysX-M_at 0.6729205
AFFX-LysX-3_at 0.04648156
AFFX-PheX-5_at 0.7834759
AFFX-PheX-M_at 0.7609373
AFFX-PheX-3_at 0.6993937
AFFX-ThrX-5_at 0.79426765
AFFX-ThrX-M_at 0.32707945

Total number of rows: 45101

Table truncated, full table size 1167 Kbytes.




Supplementary data files not provided

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