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Status |
Public on Nov 02, 2006 |
Title |
2005-07-19-81CC26-Chung-HuX3P-Rep1 |
Sample type |
RNA |
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Source name |
HNSCC from FFPE block
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Organism |
Homo sapiens |
Characteristics |
HNSCC from FFPE block
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Extracted molecule |
total RNA |
Extraction protocol |
Arcturus Paradise kit
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Label |
ENZO BioArray High Yield RNA Transcript Labeling Kit (Affymetrix, Santa Clara, CA)
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Description |
HNSCC from FFPE block
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Data processing |
quantile normalization of CEL file, GCRMA estimation of probesets, log2 transformation
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Submission date |
Mar 22, 2006 |
Last update date |
Nov 02, 2006 |
Contact name |
Christine H. Chung |
E-mail(s) |
christine.chung@vanderbilt.edu
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Phone |
615-322-4967
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Fax |
615343-7602
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Organization name |
Vanderbilt University
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Department |
Internal Medicine
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Lab |
Chung
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Street address |
777 PRB
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City |
Nashville |
State/province |
TN |
ZIP/Postal code |
37232-6307 |
Country |
USA |
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Platform ID |
GPL1352 |
Series (1) |
GSE2837 |
Survival Prediction of HNSCC using FFPE samples |
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Data table header descriptions |
ID_REF |
probeset IDs from the human X3P array |
VALUE |
Quantile normalization of CEL file, GCRMA probeset estimates, log2 transformation |
Data table |
ID_REF |
VALUE |
Hs.145357.0.A1_3p_at |
5.053439913 |
Hs.6523.1.A4_3p_at |
3.28489226 |
Hs.184387.0.A1_3p_at |
3.311839261 |
g13383475_3p_at |
2.458487829 |
Hs.26045.1.S1_3p_s_at |
3.466852583 |
Hs.17947.0.A1_3p_at |
2.356692011 |
Hs2.382100.1.S1_3p_x_at |
8.556283395 |
Hs.111323.0.S1_3p_at |
3.718477091 |
Hs.302736.0.S1_3p_at |
2.766820727 |
Hs.227806.0.S1_3p_a_at |
3.119010744 |
Hs.301570.0.S1_3p_at |
3.595267481 |
Hs.136313.0.S1_3p_at |
3.396201251 |
Hs.198899.0.S1_3p_a_at |
3.589439735 |
g9961356_3p_at |
3.592448894 |
Hs.222127.0.A1_3p_at |
2.752452069 |
Hs.283526.0.A1_3p_at |
3.11357962 |
Hs.128425.0.S1_3p_a_at |
3.694193127 |
g10835152_3p_x_at |
2.972699714 |
Hs.22208.0.S1_3p_at |
7.040788403 |
g7661625_3p_a_at |
3.758426844 |
Total number of rows: 61358
Table truncated, full table size 1891 Kbytes.
Supplementary data files not provided |
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