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Sample GSM101399 Query DataSets for GSM101399
Status Public on Mar 21, 2007
Title Cmc03m013
Sample type RNA
 
Source name cultured endothelial cells from wildtype newborn mice
Organism Mus musculus
Characteristics endothelial cells from wildtype newborn mice that were cultured in DMEM supplemented with 10% FCS, 2mM glutamine and 1x penicillin/streptomycin
Treatment protocol Mock-transfected control
Extracted molecule total RNA
Label biotin
 
Description Gene expression data from control endothelial cells from wildtype newborn mice that were cultured in DMEM supplemented with 10% FCS, 2mM glutamine and 1x penicillin/streptomycin. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Mar 22, 2006
Last update date Mar 22, 2006
Contact name Matthew Grow
Organization name Indiana University
Department Biochemistry and Molecular Biology
Lab Center for Medical Genomics
Street address 1345 W 16th St
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL1261
Series (1)
GSE4518 Divergent and Convergent Effects on Gene Expression and Function in Acute versus Chronic Endothelial Activation

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 790.4 P 0.000581
AFFX-BioB-M_at 1108.7 P 0.000044
AFFX-BioB-3_at 807.3 P 0.000052
AFFX-BioC-5_at 2766.7 P 0.000044
AFFX-BioC-3_at 3570.3 P 0.000052
AFFX-BioDn-5_at 5463.1 P 0.000044
AFFX-BioDn-3_at 10078.3 P 0.000052
AFFX-CreX-5_at 23409.5 P 0.000052
AFFX-CreX-3_at 34977.3 P 0.000044
AFFX-DapX-5_at 327.3 P 0.000297
AFFX-DapX-M_at 1033.6 P 0.000857
AFFX-DapX-3_at 2051.3 P 0.00007
AFFX-LysX-5_at 156.6 P 0.011373
AFFX-LysX-M_at 213.2 P 0.000297
AFFX-LysX-3_at 455.2 P 0.000127
AFFX-PheX-5_at 58 A 0.205712
AFFX-PheX-M_at 156.1 P 0.006187
AFFX-PheX-3_at 253.6 P 0.000169
AFFX-ThrX-5_at 89.7 A 0.108979
AFFX-ThrX-M_at 251 P 0.002865

Total number of rows: 45101

Table truncated, full table size 1217 Kbytes.




Supplementary data files not provided

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