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Sample GSM101400 Query DataSets for GSM101400
Status Public on Mar 21, 2007
Title Cmc03m014
Sample type RNA
 
Source name cultured endothelial cells from wildtype newborn mice
Organism Mus musculus
Characteristics endothelial cells from wildtype newborn mice that were cultured in DMEM supplemented with 10% FCS, 2mM glutamine and 1x penicillin/streptomycin
Treatment protocol Mock-transfected control
Extracted molecule total RNA
Label biotin
 
Description Gene expression data from control endothelial cells from wildtype newborn mice that were cultured in DMEM supplemented with 10% FCS, 2mM glutamine and 1x penicillin/streptomycin. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Mar 22, 2006
Last update date Mar 22, 2006
Contact name Matthew Grow
Organization name Indiana University
Department Biochemistry and Molecular Biology
Lab Center for Medical Genomics
Street address 1345 W 16th St
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL1261
Series (1)
GSE4518 Divergent and Convergent Effects on Gene Expression and Function in Acute versus Chronic Endothelial Activation

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 759.1 P 0.000195
AFFX-BioB-M_at 1203.3 P 0.000044
AFFX-BioB-3_at 700.9 P 0.000052
AFFX-BioC-5_at 2447.7 P 0.000052
AFFX-BioC-3_at 3113.1 P 0.000044
AFFX-BioDn-5_at 5427.9 P 0.000044
AFFX-BioDn-3_at 10581 P 0.00006
AFFX-CreX-5_at 24264.3 P 0.000044
AFFX-CreX-3_at 33965.5 P 0.000044
AFFX-DapX-5_at 318.4 P 0.00011
AFFX-DapX-M_at 1093.4 P 0.000857
AFFX-DapX-3_at 2149.2 P 0.000081
AFFX-LysX-5_at 69.2 P 0.011384
AFFX-LysX-M_at 271.2 P 0.000581
AFFX-LysX-3_at 600 P 0.000095
AFFX-PheX-5_at 98.7 P 0.023929
AFFX-PheX-M_at 166.9 P 0.005565
AFFX-PheX-3_at 271.4 P 0.000195
AFFX-ThrX-5_at 116.2 P 0.012547
AFFX-ThrX-M_at 194.4 P 0.002275

Total number of rows: 45101

Table truncated, full table size 1219 Kbytes.




Supplementary data files not provided

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