NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM101406 Query DataSets for GSM101406
Status Public on Mar 21, 2007
Title Tmc03m020
Sample type RNA
 
Source name cultured endothelial cells from wildtype newborn mice
Organism Mus musculus
Characteristics endothelial cells from wildtype newborn mice that were cultured in DMEM supplemented with 10% FCS, 2mM glutamine and 1x penicillin/streptomycin
Treatment protocol soluble sTNF 4 hour treatment
Extracted molecule total RNA
Label biotin
 
Description Gene expression data from endothelial cells from wildtype newborn mice transfected with treated for four hours with soluble TNF-alpha for transient activation. The cells were cultured in DMEM supplemented with 10% FCS, 2mM glutamine and 1x penicillin/streptomycin. Targets were produced using standard Affymetrix procedures from about 5ug of total RNA.
Data processing The data were analyzed with Microarray Suite version 5.0 (MAS 5.0) using Affymetrix default analysis settings and global scaling as normalization method.
 
Submission date Mar 22, 2006
Last update date Mar 22, 2006
Contact name Matthew Grow
Organization name Indiana University
Department Biochemistry and Molecular Biology
Lab Center for Medical Genomics
Street address 1345 W 16th St
City Indianapolis
State/province IN
ZIP/Postal code 46202
Country USA
 
Platform ID GPL1261
Series (1)
GSE4518 Divergent and Convergent Effects on Gene Expression and Function in Acute versus Chronic Endothelial Activation

Data table header descriptions
ID_REF
VALUE MAS5-calculated Signal intensity
ABS_CALL the call in an absolute analysis that indicates if the transcript was present (P), absent (A), marginal (M), or no call (NC)
DETECTION P-VALUE 'detection p-value', p-value that indicates the significance level of the detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 818.7 P 0.000195
AFFX-BioB-M_at 1254.3 P 0.000044
AFFX-BioB-3_at 842.6 P 0.000044
AFFX-BioC-5_at 3059.9 P 0.000044
AFFX-BioC-3_at 3671.6 P 0.000052
AFFX-BioDn-5_at 6078.7 P 0.000044
AFFX-BioDn-3_at 11278.7 P 0.000052
AFFX-CreX-5_at 26839.4 P 0.000052
AFFX-CreX-3_at 40894.5 P 0.000044
AFFX-DapX-5_at 390.6 P 0.00039
AFFX-DapX-M_at 1301.5 P 0.000754
AFFX-DapX-3_at 2360.1 P 0.000081
AFFX-LysX-5_at 106.1 P 0.000195
AFFX-LysX-M_at 238.8 P 0.001102
AFFX-LysX-3_at 672.6 P 0.000127
AFFX-PheX-5_at 44 A 0.227636
AFFX-PheX-M_at 142 P 0.004998
AFFX-PheX-3_at 337.4 P 0.000147
AFFX-ThrX-5_at 134.6 P 0.009337
AFFX-ThrX-M_at 280.3 P 0.000509

Total number of rows: 45101

Table truncated, full table size 1217 Kbytes.




Supplementary data files not provided

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap