GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM1014246
Query DataSets for GSM1014246
Status
Public on Apr 22, 2013
Title
HCC1395 21886
Sample type
RNA
Source name
Breast cancer cell line
Organism
Homo sapiens
Characteristics
cell line: HCC1395
Growth protocol
Cell lines were grown according to standard conditions.
Extracted molecule
total RNA
Extraction protocol
Total RNA was extracted with RNABee (Campro, Veenendaal, the Netherlands) according to the manufacturer procedure
Label
biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Data processing
The data were using Affymetrix software Expression Console with default analysis settings and RMA as normalization method.
Submission date
Oct 03, 2012
Last update date
Apr 22, 2013
Contact name
Marcel Smid
Organization name
Erasmus MC
Department
Medical Oncology
Street address
Dr. Molewaterplein 50
City
Rotterdam
ZIP/Postal code
PO Box 2040, 3000CA
Country
Netherlands
Platform ID
GPL13158
Series (1)
GSE41313
Expression data from breast cancer cell lines
Data table header descriptions
ID_REF
VALUE
log2 RMA signal
Data table
ID_REF
VALUE
1007_PM_s_at
9.750197
1053_PM_at
8.255191
117_PM_at
3.280408
121_PM_at
4.224516
1255_PM_g_at
2.356778
1294_PM_at
5.45006
1316_PM_at
4.212709
1320_PM_at
3.615712
1405_PM_i_at
10.45473
1431_PM_at
3.433132
1438_PM_at
4.369513
1487_PM_at
7.183804
1494_PM_f_at
3.419654
1552256_PM_a_at
7.939651
1552257_PM_a_at
8.450193
1552258_PM_at
3.519058
1552261_PM_at
2.65008
1552263_PM_at
6.19412
1552264_PM_a_at
7.357597
1552266_PM_at
2.95579
Total number of rows:
54715
Table truncated, full table size
1212 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM1014246_21886.CEL.gz
2.1 Mb
(ftp)
(http)
CEL
Processed data included within Sample table
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
