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Sample GSM1014446 Query DataSets for GSM1014446
Status Public on Oct 01, 2013
Title hepatc progenitor cell derived tumor [HPC1]
Sample type RNA
 
Source name HPC1
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: hepatc progenitor cell derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 1
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2945.599 0
ILMN_2721178 755.0803 0
ILMN_3033922 557.9348 0
ILMN_3092673 2305.385 0
ILMN_2816356 11.96763 0.1140351
ILMN_2808939 1109.904 0
ILMN_2634564 598.1835 0
ILMN_2737647 -14.83818 0.9799499
ILMN_2734484 251.3443 0
ILMN_2952292 52.4852 0
ILMN_2699078 -6.638873 0.7593985
ILMN_1213681 143.6984 0
ILMN_2735413 39.0648 0.001253133
ILMN_2735415 33.12481 0.002506266
ILMN_2891688 176.6291 0
ILMN_2637698 1261.882 0
ILMN_2674228 258.9233 0
ILMN_2601546 -6.561063 0.7568922
ILMN_1230831 7.951234 0.1842105
ILMN_2848071 86.46493 0

Total number of rows: 25697

Table truncated, full table size 731 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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