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Sample GSM1014458 Query DataSets for GSM1014458
Status Public on Oct 01, 2013
Title hepatoblast derived tumor [HB3]
Sample type RNA
 
Source name HB3
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: hepatoblast derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 13
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1058.447 0
ILMN_2721178 225.1474 0
ILMN_3033922 597.4088 0
ILMN_3092673 3555.168 0
ILMN_2816356 60.7792 0.002506266
ILMN_2808939 720.7642 0
ILMN_2634564 574.0611 0
ILMN_2737647 4.722696 0.2669173
ILMN_2734484 170.7711 0
ILMN_2952292 13.24715 0.1052632
ILMN_2699078 -4.269534 0.6679198
ILMN_1213681 164.2344 0
ILMN_2735413 124.8646 0
ILMN_2735415 161.8392 0
ILMN_2891688 303.167 0
ILMN_2637698 1346.916 0
ILMN_2674228 261.8771 0
ILMN_2601546 19.88005 0.05764411
ILMN_1230831 -2.836571 0.593985
ILMN_2848071 254.1066 0

Total number of rows: 25697

Table truncated, full table size 743 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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