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Sample GSM1014475 Query DataSets for GSM1014475
Status Public on Oct 01, 2013
Title hepatoblast derived tumor [HB20]
Sample type RNA
 
Source name HB20
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: hepatoblast derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 30
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1785.725 0
ILMN_2721178 405.0806 0
ILMN_3033922 538.5332 0
ILMN_3092673 3770.796 0
ILMN_2816356 29.58157 0.002506266
ILMN_2808939 1013.173 0
ILMN_2634564 511.7965 0
ILMN_2737647 3.376406 0.2769423
ILMN_2734484 445.2169 0
ILMN_2952292 35.62306 0
ILMN_2699078 1.635681 0.3546366
ILMN_1213681 150.3883 0
ILMN_2735413 111.1933 0
ILMN_2735415 120.3894 0
ILMN_2891688 396.9811 0
ILMN_2637698 1046.935 0
ILMN_2674228 250.0737 0
ILMN_2601546 9.319318 0.1102757
ILMN_1230831 7.603574 0.1466165
ILMN_2848071 252.0491 0

Total number of rows: 25697

Table truncated, full table size 722 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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