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Sample GSM1014477 Query DataSets for GSM1014477
Status Public on Oct 01, 2013
Title adult hepatocyte derived tumor [AH2]
Sample type RNA
 
Source name AH2
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: adult hepatocyte derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 32
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1499.296 0
ILMN_2721178 321.5084 0
ILMN_3033922 370.6046 0
ILMN_3092673 1909.847 0
ILMN_2816356 89.56829 0
ILMN_2808939 761.9844 0
ILMN_2634564 649.4769 0
ILMN_2737647 -5.844081 0.7105263
ILMN_2734484 402.6901 0
ILMN_2952292 35.21856 0
ILMN_2699078 -2.659542 0.5451128
ILMN_1213681 154.3203 0
ILMN_2735413 15.05289 0.06015038
ILMN_2735415 13.14921 0.0764411
ILMN_2891688 145.5386 0
ILMN_2637698 1632.603 0
ILMN_2674228 260.0922 0
ILMN_2601546 9.102201 0.1278196
ILMN_1230831 7.375491 0.160401
ILMN_2848071 13.07862 0.0764411

Total number of rows: 25697

Table truncated, full table size 724 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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