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Sample GSM1014480 Query DataSets for GSM1014480
Status Public on Oct 01, 2013
Title adult hepatocyte derived tumor [AH5]
Sample type RNA
 
Source name AH5
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: adult hepatocyte derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 35
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1216.135 0
ILMN_2721178 291.2911 0
ILMN_3033922 422.7362 0
ILMN_3092673 3206.128 0
ILMN_2816356 43.32928 0
ILMN_2808939 917.4523 0
ILMN_2634564 510.3886 0
ILMN_2737647 4.790276 0.2205514
ILMN_2734484 371.9273 0
ILMN_2952292 37.80457 0
ILMN_2699078 3.759223 0.2531328
ILMN_1213681 125.2889 0
ILMN_2735413 82.29783 0
ILMN_2735415 74.8159 0
ILMN_2891688 297.7913 0
ILMN_2637698 1279.169 0
ILMN_2674228 164.0672 0
ILMN_2601546 -7.335101 0.7656642
ILMN_1230831 -2.234893 0.508772
ILMN_2848071 162.0502 0

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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