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Sample GSM1014482 Query DataSets for GSM1014482
Status Public on Oct 01, 2013
Title adult hepatocyte derived tumor [AH7]
Sample type RNA
 
Source name AH7
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: adult hepatocyte derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 37
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1805.543 0
ILMN_2721178 379.7614 0
ILMN_3033922 309.5815 0
ILMN_3092673 1600.064 0
ILMN_2816356 27.0301 0.006265664
ILMN_2808939 679.7809 0
ILMN_2634564 669.9062 0
ILMN_2737647 6.467754 0.1353384
ILMN_2734484 220.8375 0
ILMN_2952292 68.00948 0
ILMN_2699078 -10.66525 0.8947368
ILMN_1213681 157.5457 0
ILMN_2735413 3.300574 0.235589
ILMN_2735415 15.85385 0.02882206
ILMN_2891688 221.2173 0
ILMN_2637698 1844.329 0
ILMN_2674228 285.3793 0
ILMN_2601546 -5.395353 0.6566416
ILMN_1230831 -5.566567 0.6691729
ILMN_2848071 28.24071 0.003759399

Total number of rows: 25697

Table truncated, full table size 722 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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