NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1014486 Query DataSets for GSM1014486
Status Public on Oct 01, 2013
Title adult hepatocyte derived tumor [AH11]
Sample type RNA
 
Source name AH11
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: adult hepatocyte derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 41
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2325.705 0
ILMN_2721178 525.582 0
ILMN_3033922 409.1966 0
ILMN_3092673 1467.305 0
ILMN_2816356 22.18905 0.01629073
ILMN_2808939 665.4703 0
ILMN_2634564 359.851 0
ILMN_2737647 -4.412909 0.6528822
ILMN_2734484 207.7524 0
ILMN_2952292 39.02145 0.001253133
ILMN_2699078 -2.278068 0.5413534
ILMN_1213681 169.7372 0
ILMN_2735413 88.08176 0
ILMN_2735415 40.88692 0.001253133
ILMN_2891688 151.5017 0
ILMN_2637698 1682.386 0
ILMN_2674228 311.7833 0
ILMN_2601546 -5.463206 0.7130326
ILMN_1230831 -16.55315 0.9887218
ILMN_2848071 18.95269 0.03258145

Total number of rows: 25697

Table truncated, full table size 728 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap