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Sample GSM1014488 Query DataSets for GSM1014488
Status Public on Oct 01, 2013
Title adult hepatocyte derived tumor [AH13]
Sample type RNA
 
Source name AH13
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: adult hepatocyte derived tumor
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Tumor
SAMPLE 43
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2286.729 0
ILMN_2721178 555.9762 0
ILMN_3033922 599.6228 0
ILMN_3092673 1817.375 0
ILMN_2816356 2.570151 0.3421053
ILMN_2808939 679.4811 0
ILMN_2634564 558.3337 0
ILMN_2737647 14.15447 0.07894737
ILMN_2734484 349.6363 0
ILMN_2952292 30.02322 0.006265664
ILMN_2699078 -3.304291 0.6090226
ILMN_1213681 302.2851 0
ILMN_2735413 7.579848 0.1854637
ILMN_2735415 13.80243 0.08270676
ILMN_2891688 128.435 0
ILMN_2637698 2196.192 0
ILMN_2674228 476.2912 0
ILMN_2601546 -3.820263 0.6428571
ILMN_1230831 -11.46754 0.9385965
ILMN_2848071 -6.508188 0.7543859

Total number of rows: 25697

Table truncated, full table size 729 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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