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Sample GSM1014497 Query DataSets for GSM1014497
Status Public on Oct 01, 2013
Title oval cell parental control [HPC_CRTL2]
Sample type RNA
 
Source name HPC_CRTL2
Organism Mus musculus
Characteristics strain: C57BL/6
cell type: oval cell parental control
Extracted molecule total RNA
Extraction protocol Total RNA was extracted using Qiagen mini kit. Quality control and measurement were performed using NanoDrop and Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared using Ambion Totalprep RNA Amplification kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Control sample
SAMPLE 52
Data processing Data was processed by means of Genome Studio v2011 from illumina, Inc.
 
Submission date Oct 03, 2012
Last update date Oct 01, 2013
Contact name Jesper B Andersen
Organization name Copenhagen University
Department Biotech Research and Innovation Centre
Lab Andersen Group
Street address Ole Maaloes Vej 5
City Copenhagen
ZIP/Postal code 2200
Country Denmark
 
Platform ID GPL6885
Series (1)
GSE41312 Modeling Pathogenesis of Primary Liver Cancer in Lineage Specific Cell Types

Data table header descriptions
ID_REF
VALUE Quantile normalized with background noise subtraction
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 3393.457 0
ILMN_2721178 507.9333 0
ILMN_3033922 832.2814 0
ILMN_3092673 2734.041 0
ILMN_2816356 16.08179 0.03132832
ILMN_2808939 661.3004 0
ILMN_2634564 250.4493 0
ILMN_2737647 -7.558779 0.7944862
ILMN_2734484 497.8279 0
ILMN_2952292 39.27933 0.001253133
ILMN_2699078 3.875174 0.2293233
ILMN_1213681 188.5071 0
ILMN_2735413 74.00323 0
ILMN_2735415 69.9063 0
ILMN_2891688 491.8903 0
ILMN_2637698 1248.462 0
ILMN_2674228 111.761 0
ILMN_2601546 10.10216 0.08270676
ILMN_1230831 -6.196879 0.7305765
ILMN_2848071 -4.580895 0.6428571

Total number of rows: 25697

Table truncated, full table size 738 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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