NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1016730 Query DataSets for GSM1016730
Status Public on Sep 03, 2013
Title mRNA, mouse postnatal day1, biological rep 5
Sample type RNA
 
Source name Lung tissue, mouse postnatal, day1, biological rep 5
Organism Mus musculus
Characteristics strain: C57BL/6
tissue: whole lung
age: 1 day
Extracted molecule total RNA
Extraction protocol Total RNA extracted using miRNeasy mini kit (Qiagen) according to the manufacturer's instructions.
Label Cy3
Label protocol Cy3 labeled RNA was prepared according to the standard Agilent protocol from 500ng total RNA
 
Hybridization protocol Labeled RNA was hybridized for 17 hr at 65C on Agilent 8X60K microRNA array. Arrays were washed according to the manufacturer's protocol.
Scan protocol Slides were scanned immediately after washing on the Agilent DNA Microarray Scanner (G2505B) using one color scan setting for 8x60K array slides
Description gene expression data from lung tissue of postnatal mice
d1_5
Data processing The scanned images were analyzed with Feature Extraction Software 10.7.1.1 (Agilent) using default parameters.
 
Submission date Oct 09, 2012
Last update date Sep 03, 2013
Contact name Kusum Vijay Pandit
E-mail(s) panditkusum@yahoo.com
Phone 412-624-9046
Organization name University of Pittsburgh
Department Medicine-PACCM
Street address 200, Lothrop street, W1200-25A Biomedical Science Tower
City Pittsburgh
State/province PA
ZIP/Postal code 15213
Country USA
 
Platform ID GPL10787
Series (1)
GSE41412 Gene expression data in mouse fetal lungs

Data table header descriptions
ID_REF
VALUE log2 Cyclic lowess normalized signal intensity

Data table
ID_REF VALUE
A_30_P01017425 6.676593215
A_30_P01017426 6.214527481
A_30_P01017427 3.270533436
A_30_P01017428 5.919256912
A_30_P01017429 3.927241548
A_30_P01017430 3.971761017
A_30_P01017431 4.854538799
A_30_P01017432 6.886526784
A_30_P01017433 7.056234192
A_30_P01017434 7.464346697
A_30_P01017435 2.616211225
A_30_P01017436 3.20427687
A_30_P01017437 8.390253498
A_30_P01017438 2.791797478
A_30_P01017439 5.507650101
A_30_P01017440 4.401471285
A_30_P01017441 4.481617151
A_30_P01017442 8.601496253
A_30_P01017443 9.806324767
A_30_P01017444 4.494052787

Total number of rows: 52095

Table truncated, full table size 1318 Kbytes.




Supplementary file Size Download File type/resource
GSM1016730_1_1d_5.txt.gz 3.2 Mb (ftp)(http) TXT
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap