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Sample GSM1027641 Query DataSets for GSM1027641
Status Public on Nov 01, 2012
Title CLP LY6D- FOXO1wt rep2
Sample type RNA
 
Source name CLP LY6D- FOXO1 wt
Organism Mus musculus
Characteristics tissue type: bone marrow
genotype/variation: wild-type
facs-sorting: LIN(GR1/MAC1/TER119/CD3E/LY6C/NK1.1)-CD11C-CD19-FLT3hiIL7R+SCA1loKITloLY6D-
Treatment protocol No treatment has been used.
Growth protocol Cells obtained fresh from the bone marrow of mice.
Extracted molecule total RNA
Extraction protocol RNeasy Micro kit (Qiagen) has been used to extract RNA according to manufacturer instruction
Label biotin
Label protocol RNA was labelled and amplified according to Affymetrix TM GeneChip Expression Analysis Technical Manual 2011
 
Hybridization protocol cRNA fragments hybridized against MOE430 2.0 Affymetrix gene expression arrays chip according to manufacturer instructions
Scan protocol Chips were scanned using a GeneChip TM Scanner 3000
Description Expression profiling of LY6D- CLPs derived from Foxo1 wild-type mice.
Data processing Expression values were acquired using RMA and custom CDF files (Brainarray, ENTREZG_14.1.0).
 
Submission date Oct 31, 2012
Last update date Nov 01, 2012
Contact name Robert MÃ¥nsson
E-mail(s) robert.mansson@ki.se
Organization name Lund University
Department Hemapotoietic stem cell biology
Street address Klinikgatan 26, BMC B12
City Lund
ZIP/Postal code 221 84
Country Sweden
 
Platform ID GPL16225
Series (1)
GSE41931 Expression profiling of early lymphoid progenitors deficient for Ebf1 and Foxo1

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
100008567_at 26.033103
100009600_at 26.902943
100012_at 4.785535
100017_at 93.485095
100019_at 183.988009
100034251_at 762.393563
100034739_at 9.04946
100034748_at 6.488684
100036520_at 9.281249
100036521_at 231.472337
100036523_at 15.396622
100036768_at 40.229039
100037258_at 86.781977
100037262_at 11.773531
100037278_at 192.231332
100038347_at 47.487235
100038358_at 6.457024
100038371_at 4.609185
100038392_at 36.477755
100038398_at 5.759556

Total number of rows: 17370

Table truncated, full table size 328 Kbytes.




Supplementary file Size Download File type/resource
GSM1027641_CLP_LY6D-_FOXO1wt_rep2.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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