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Sample GSM1027649 Query DataSets for GSM1027649
Status Public on Nov 01, 2012
Title CLP LY6D+ FOXO1wt rep2
Sample type RNA
 
Source name CLP LY6D+ FOXO1 wt
Organism Mus musculus
Characteristics tissue type: bone marrow
genotype/variation: wild-type
facs-sorting: LIN(GR1/MAC1/TER119/CD3E/LY6C/NK1.1)-CD11C-CD19-FLT3hiIL7R+SCA1loKITloLY6D+
Treatment protocol No treatment has been used.
Growth protocol Cells obtained fresh from the bone marrow of mice.
Extracted molecule total RNA
Extraction protocol RNeasy Micro kit (Qiagen) has been used to extract RNA according to manufacturer instruction
Label biotin
Label protocol RNA was labelled and amplified according to Affymetrix TM GeneChip Expression Analysis Technical Manual 2011
 
Hybridization protocol cRNA fragments hybridized against MOE430 2.0 Affymetrix gene expression arrays chip according to manufacturer instructions
Scan protocol Chips were scanned using a GeneChip TM Scanner 3000
Description Expression profiling of LY6D- CLPs derived from Foxo1 wild-type mice.
Data processing Expression values were acquired using RMA and custom CDF files (Brainarray, ENTREZG_14.1.0).
 
Submission date Oct 31, 2012
Last update date Nov 01, 2012
Contact name Robert MÃ¥nsson
E-mail(s) robert.mansson@ki.se
Organization name Lund University
Department Hemapotoietic stem cell biology
Street address Klinikgatan 26, BMC B12
City Lund
ZIP/Postal code 221 84
Country Sweden
 
Platform ID GPL16225
Series (1)
GSE41931 Expression profiling of early lymphoid progenitors deficient for Ebf1 and Foxo1

Data table header descriptions
ID_REF
VALUE RMA signal intensity

Data table
ID_REF VALUE
100008567_at 19.224178
100009600_at 15.326212
100012_at 4.759619
100017_at 99.336134
100019_at 181.116715
100034251_at 162.2638
100034739_at 11.988978
100034748_at 7.499103
100036520_at 7.40699
100036521_at 123.998706
100036523_at 16.279757
100036768_at 30.532714
100037258_at 95.440938
100037262_at 11.372635
100037278_at 402.735676
100038347_at 87.901587
100038358_at 8.594112
100038371_at 4.781728
100038392_at 15.374501
100038398_at 5.210273

Total number of rows: 17370

Table truncated, full table size 328 Kbytes.




Supplementary file Size Download File type/resource
GSM1027649_CLP_LY6D+_FOXO1wt_rep2.CEL.gz 3.2 Mb (ftp)(http) CEL
Processed data included within Sample table

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