NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM10441 Query DataSets for GSM10441
Status Public on Jan 01, 2005
Title WT Ovule 1
Sample type RNA
 
Source name Genotype: Ws-0, Wild Type; Stage: Unfertilized Ovule; Biological Replica: 1 of 2
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Description Growth Condition: Plants were grown in a Conviron chamber
under continuous light with fluorescent lamps at 20oC and 50% - 70% relative
humidity. Experiments were performed as described (Le et. al., 2003, PNAS).


Microarray Methods: Total RNA was extracted using the Hot
Borate Method (ref.). Fifteen micrograms of biotinylated complementary RNA
(cRNA) was prepared as described (Le et. al., 2003, PNAS). cRNA was
subsequently hybridized to Affymetrix ATH1 Arabidopsis GeneChips. The scanned
array images were analyzed using Affymetrix Microarray Suite 5.0 (MAS 5.0) with
Keywords = Arabidopsis
Keywords = seed development
Lot batch = 2003282
 
Submission date Sep 24, 2003
Last update date Aug 28, 2018
Contact name Bob Goldberg
E-mail(s) bobglab@mcdb.ucla.edu
Phone 310-825-3270
Organization name University of California, Los Angeles
Department Molecular, Cell and Developmental Biology
Street address 610 Charles E Young Drive East
City Los Angeles
State/province CA
ZIP/Postal code 90095
Country USA
 
Platform ID GPL198
Series (1)
GSE680 Transcript Profiling of Arabidopsis Plant Life Cycle
Relations
Reanalyzed by GSE119083

Data table header descriptions
ID_REF
VALUE This is the final calculated measurement for each probe set identifier that has been made comparable across all samples and rows
ABS_CALL A qualitative measurement indicating if the probe set is detected (Present ; P), not detected (Absent; A), or marginally detected (Marginal; M)
DETECTION P-VALUE A p-value indicating the significance of the Detection call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 710.4 P 0.00011
AFFX-BioB-M_at 1556.9 P 0.000052
AFFX-BioB-3_at 1520 P 0.000081
AFFX-BioC-5_at 2260.2 P 0.000044
AFFX-BioC-3_at 1422.7 P 0.000052
AFFX-BioDn-5_at 2078.2 P 0.000052
AFFX-BioDn-3_at 9636 P 0.000044
AFFX-CreX-5_at 20123.3 P 0.000044
AFFX-CreX-3_at 25700.2 P 0.000044
AFFX-DapX-5_at 29.7 A 0.239063
AFFX-DapX-M_at 27.4 A 0.699394
AFFX-DapX-3_at 19.8 A 0.760937
AFFX-LysX-5_at 15.9 A 0.51489
AFFX-LysX-M_at 5.2 A 0.98333
AFFX-LysX-3_at 29.2 A 0.340661
AFFX-PheX-5_at 3.3 A 0.989683
AFFX-PheX-M_at 25 A 0.737173
AFFX-PheX-3_at 18.7 A 0.617401
AFFX-ThrX-5_at 8.5 A 0.814869
AFFX-ThrX-M_at 14.9 A 0.699394

Total number of rows: 22810

Table truncated, full table size 587 Kbytes.




Supplementary file Size Download File type/resource
GSM10441.CEL.gz 3.2 Mb (ftp)(http) CEL

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap