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Sample GSM104736

Query DataSets for GSM104736

Status

Public on Mar 11, 2007

Title

brownfat_KO1_day3

Sample type

RNA

Source name

brownfat

Organism

Mus musculus

Characteristics

Strain: C57BL/6J
Gender: Male
age: 3days
genotype:KO
tissue: brown fat

Extracted molecule

total RNA

Extraction protocol

Trizol reagents

Label

biotin

Description

brownfatmaleko1day3

Data processing

The results were quantified and analyzed using GCOS 1.2 software (Affymetrix, Inc.) using default values (Scaling, Target Signal Intensity = 500; Normalization, All Probe Sets; Parameters, all set at default values).

Submission date

Apr 10, 2006

Last update date

Sep 21, 2006

Contact name

Lola Rahib

E-mail(s)

lrahib@mednet.ucla.edu

Phone

310-825-7967

Fax

310-794-5446

Organization name

UCLA

Department

Human Genetics

Lab

Katrina Dipple

Street address

695 Charles E young Drive south Gonda 5335

City

Los Angeles

State/province

ZIP/Postal code

90095

Country

USA

Platform ID

GPL1261

Series (1)

GSE4656

day3 brown fat from wt compared to day3 from Gyk ko

Data table header descriptions
ID_REF
VALUE	Signal (GCOS)
ABS_CALL	Detection
DETECTION P-VALUE	detection p-value

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	467.8	P	0.000754
AFFX-BioB-M_at	908.5	P	0.00011
AFFX-BioB-3_at	356.5	P	0.000052
AFFX-BioC-5_at	1253.8	P	0.000169
AFFX-BioC-3_at	1130.7	P	0.000044
AFFX-BioDn-5_at	1451.4	P	0.000052
AFFX-BioDn-3_at	6653.9	P	0.000195
AFFX-CreX-5_at	19511.4	P	0.000052
AFFX-CreX-3_at	19793.2	P	0.000044
AFFX-DapX-5_at	1912.5	P	0.000044
AFFX-DapX-M_at	3226.9	P	0.000258
AFFX-DapX-3_at	3068	P	0.000052
AFFX-LysX-5_at	181	P	0.000127
AFFX-LysX-M_at	404.6	P	0.012547
AFFX-LysX-3_at	635	P	0.000044
AFFX-PheX-5_at	256.3	P	0.00039
AFFX-PheX-M_at	331	P	0.00034
AFFX-PheX-3_at	344.1	P	0.000754
AFFX-ThrX-5_at	411.2	P	0.000857
AFFX-ThrX-M_at	495.9	P	0.000095

Total number of rows: 45101

Table truncated, full table size 1218 Kbytes.

Supplementary data files not provided