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Sample GSM1049460 Query DataSets for GSM1049460
Status Public on Dec 03, 2018
Title brain control rep 2
Sample type RNA
 
Source name brain control
Organism Papio hamadryas
Characteristics gender: female
developmental stage: 165 dGa
tissue: brain (frontal cortex)
mother's pregnancy condition: control
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description IL_MNR_2
replicate 2
Data processing The data were background corrected with GenomeStudio v1.9.0. Data was customized to include only probes that were detected at greater than or equal to 95% confidence in all baboon samples of at least one tissue type from previous Illumina gene expression experiments (n=22,148). These included probe signals from fetal baboon brain (n=12), liver (n=12), placenta (n=12), and kidney (n=12). All median normalisation and log2 transformation was performed on the filtered dataset in Genesifter Analysis Edition (http://www.geospiza.com/Products/AnalysisEdition.shtml).
 
Submission date Dec 05, 2012
Last update date Dec 03, 2018
Contact name Laura L Cox
Organization name Texas Biomedical Research Institute
Department Genetics
Lab Cox Lab
Street address 7620 NW Loop 410
City San Antonio
State/province Texas
ZIP/Postal code 78227-5301
Country USA
 
Platform ID GPL6097
Series (1)
GSE42756 Effects of Intrauterine Growth Restriction on Ribosomal Subunit mRNA and Protein Expression in the Frontal Cortex of Near-Term Fetal Baboons

Data table header descriptions
ID_REF
VALUE median-normalized, log2-transformed signal

Data table
ID_REF VALUE
1850095 -7.20418
2810368 10.1508
3060497 9.23734
107000736 7.4432
100360132 6.5822
105720576 7.70168
60400 6.30513
5360152 7.01234
2370619 -1.85446
1190162 -1.42168
4210138 7.00974
7040129 -13.4163
1940736 9.9124
6180110 5.52206
6180204 8.72348
3800270 9.95768
5860450 3.88729
3940601 -4.50884
101240048 5.10471
5340528 -1.39987

Total number of rows: 22148

Table truncated, full table size 369 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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