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Sample GSM105142

Query DataSets for GSM105142

Status

Public on Mar 11, 2007

Title

brownfat_KO3_day3

Sample type

RNA

Source name

brownfat

Organism

Mus musculus

Characteristics

Strain: C57BL/6J
Gender: male
Age: day3
Genotype: KO
Tissue: brown fat

Extracted molecule

total RNA

Extraction protocol

Trizol reagents

Label

biotin

Description

brownfatmaleKO3day3

Data processing

The results were quantified and analyzed using GCOS 1.2 software (Affymetrix, Inc.) using default values (Scaling, Target Signal Intensity = 500; Normalization, All Probe Sets; Parameters, all set at default values).

Submission date

Apr 11, 2006

Last update date

Sep 21, 2006

Contact name

Lola Rahib

E-mail(s)

lrahib@mednet.ucla.edu

Phone

310-825-7967

Fax

310-794-5446

Organization name

UCLA

Department

Human Genetics

Lab

Katrina Dipple

Street address

695 Charles E young Drive south Gonda 5335

City

Los Angeles

State/province

ZIP/Postal code

90095

Country

USA

Platform ID

GPL1261

Series (1)

GSE4656

day3 brown fat from wt compared to day3 from Gyk ko

Data table header descriptions
ID_REF
VALUE	Signal (GCOS)
ABS_CALL	Detection
DETECTION P-VALUE	detection p-value

Data table
ID_REF	VALUE	ABS_CALL	DETECTION P-VALUE
AFFX-BioB-5_at	492.9	P	0.000972
AFFX-BioB-M_at	834.9	P	0.000081
AFFX-BioB-3_at	284	P	0.000052
AFFX-BioC-5_at	1196.4	P	0.000169
AFFX-BioC-3_at	956.6	P	0.000044
AFFX-BioDn-5_at	1303.1	P	0.000052
AFFX-BioDn-3_at	7685.8	P	0.000127
AFFX-CreX-5_at	20117.9	P	0.000052
AFFX-CreX-3_at	19707.6	P	0.000044
AFFX-DapX-5_at	302	P	0.000297
AFFX-DapX-M_at	732.3	P	0.003595
AFFX-DapX-3_at	795.3	P	0.000147
AFFX-LysX-5_at	59	P	0.013811
AFFX-LysX-M_at	149.6	A	0.195266
AFFX-LysX-3_at	230.4	P	0.000297
AFFX-PheX-5_at	38.5	A	0.262827
AFFX-PheX-M_at	42.7	A	0.250796
AFFX-PheX-3_at	121.3	A	0.185131
AFFX-ThrX-5_at	64.2	M	0.054213
AFFX-ThrX-M_at	163.8	P	0.015183

Total number of rows: 45101

Table truncated, full table size 1219 Kbytes.

Supplementary data files not provided