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Sample GSM1054923 Query DataSets for GSM1054923
Status Public on Jan 01, 2015
Title normal miRNA in colon mucosa 206
Sample type RNA
 
Source name colon mucosa 206
Organism Homo sapiens
Characteristics gender: Female
age: 15
tissue: Colon mucosa
disease state: normal
Treatment protocol Flash freezing of biopsy samples on dry ice
Extracted molecule total RNA
Extraction protocol Qiangen/Qiazol - miRNA Isolation Kit
Label biotin
Label protocol Genisphere FlashTag HSR
 
Hybridization protocol Fluidics Protocol FS450-0003
Scan protocol Affymetrix Genechip Scanner 7G
Description Normal colon mucosa sample
Data processing The Affymetrix Expression Console was used to generate RMA-DABG normalized miRNA expression levels.
 
Submission date Dec 18, 2012
Last update date Jan 01, 2015
Contact name R. Alan Harris
E-mail(s) rharris1@bcm.edu
Organization name Baylor College of Medicine
Department Molecular and Human Genetics
Street address 1 Baylor Plaza
City Houston
State/province TX
ZIP/Postal code 77030
Country USA
 
Platform ID GPL16384
Series (1)
GSE43009 miRNA data in colon mucosa samples from individuals with ulcerative colitis and normal controls

Data table header descriptions
ID_REF
VALUE RMA-DABG normalized miRNA expression (human only)

Data table
ID_REF VALUE
hp_hsa-let-7a-1_st 1.687489
hp_hsa-let-7a-1_x_st 1.976207
hp_hsa-let-7a-2_st 1.001733
hp_hsa-let-7a-2_x_st 1.274756
hp_hsa-let-7a-3_st 1.524261
hp_hsa-let-7b_st 2.215444
hp_hsa-let-7b_x_st 2.031629
hp_hsa-let-7c_st 2.432023
hp_hsa-let-7c_x_st 1.301564
hp_hsa-let-7d_st 2.102204
hp_hsa-let-7d_x_st 2.028205
hp_hsa-let-7e_st 1.206875
hp_hsa-let-7f-1_st 1.380359
hp_hsa-let-7f-1_x_st 1.369867
hp_hsa-let-7f-2_st 2.206681
hp_hsa-let-7f-2_x_st 1.396703
hp_hsa-let-7g_st 1.431111
hp_hsa-let-7g_x_st 1.473338
hp_hsa-let-7i_st 1.308495
hp_hsa-mir-1-1_st 1.646107

Total number of rows: 3391

Table truncated, full table size 90 Kbytes.




Supplementary file Size Download File type/resource
GSM1054923_RK_296_miRNA-3_0_.CEL.gz 786.8 Kb (ftp)(http) CEL
Processed data included within Sample table

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