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Sample GSM1055343 Query DataSets for GSM1055343
Status Public on Sep 05, 2013
Title Hippocampus, Wild type, young (1 month)-2
Sample type RNA
Source name Hippocampus, Wild type, young (1 month)
Organism Mus musculus
Characteristics background strain: C57BL/6J
genotype/variation: wild type
age: Young (1 month)
tissue: Hippocampus
Growth protocol Wild type and knockout mice were fed a chow diet after weaning for the entire duration of the experiment. Young mice were sacrificed at 1 month and old mice were sacrificed at 21-23 months.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, and then transferred to QIAGEN RNeasy columns and Dnase I treated according to the prescribed protocol provided with the kit. Quality control and RNA concentration were determined using Nanodrop and Agilent Bioanalyser.
Label biotin
Label protocol Epicentre TargetAmp Nano-g Biotin-aRNA Labeling Kit for Illumina (TAN07924)-Manufacturer's protocol 200ng input total RNA
Hybridization protocol Illumina Whole Genome Expression Direct Hybridization Assay Guide- 750 ng labeled aRNA hybridized to array
Scan protocol Standard Illumina scanning protocol
Description 2.AVG_Signal
Data processing Quantile normalization and background subtraction using Illumina GenomeStudio Gene Expression Module v1.9.0
Submission date Dec 19, 2012
Last update date Sep 05, 2013
Contact name Ryan Grant
Phone 225-763-2763
Fax 225-763-0261
Organization name Pennington Biomedical Research Center
Lab Immunobiology
Street address 6400 Perkins Rd
City Baton Rouge
State/province LA
ZIP/Postal code 70808
Country USA
Platform ID GPL6885
Series (1)
GSE43034 Canonical Nlrp3 inflammasome activation links systemic age-related inflammation with functional decline

Data table header descriptions
VALUE Illumina GenomeStudio background subtracted and quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1984.953 0
ILMN_2721178 299.9173 0
ILMN_3033922 494.7282 0
ILMN_3092673 3386.448 0
ILMN_2816356 20.45766 0.02255639
ILMN_2808939 425.6286 0
ILMN_2634564 302.6006 0
ILMN_2737647 3.848353 0.2318296
ILMN_2734484 394.4452 0
ILMN_2952292 48.0929 0
ILMN_2699078 -4.685878 0.6766917
ILMN_1213681 166.6863 0
ILMN_2735413 -7.736245 0.8634085
ILMN_2735415 7.353378 0.1466165
ILMN_2891688 624.8985 0
ILMN_2637698 964.5756 0
ILMN_2674228 96.51598 0
ILMN_2601546 8.642048 0.1240602
ILMN_1230831 8.35627 0.1265664
ILMN_2848071 15.90203 0.05012531

Total number of rows: 25697

Table truncated, full table size 725 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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