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Sample GSM1055371 Query DataSets for GSM1055371
Status Public on Sep 05, 2013
Title Hippocampus, CASP 11-/-, young (1 month)-2
Sample type RNA
 
Source name Hippocampus, CASP 11-/-, young (1 month)
Organism Mus musculus
Characteristics background strain: C57BL/6J
genotype/variation: CASP11-/-
age: Young (1 month)
tissue: Hippocampus
Growth protocol Wild type and knockout mice were fed a chow diet after weaning for the entire duration of the experiment. Young mice were sacrificed at 1 month and old mice were sacrificed at 21-23 months.
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, and then transferred to QIAGEN RNeasy columns and Dnase I treated according to the prescribed protocol provided with the kit. Quality control and RNA concentration were determined using Nanodrop and Agilent Bioanalyser.
Label biotin
Label protocol Epicentre TargetAmp Nano-g Biotin-aRNA Labeling Kit for Illumina (TAN07924)-Manufacturer's protocol 200ng input total RNA
 
Hybridization protocol Illumina Whole Genome Expression Direct Hybridization Assay Guide- 750 ng labeled aRNA hybridized to array
Scan protocol Standard Illumina scanning protocol
Description 32.AVG_Signal
Data processing Quantile normalization and background subtraction using Illumina GenomeStudio Gene Expression Module v1.9.0
 
Submission date Dec 19, 2012
Last update date Sep 05, 2013
Contact name Ryan Grant
E-mail(s) ryan.grant@pbrc.edu
Phone 225-763-2763
Fax 225-763-0261
Organization name Pennington Biomedical Research Center
Lab Immunobiology
Street address 6400 Perkins Rd
City Baton Rouge
State/province LA
ZIP/Postal code 70808
Country USA
 
Platform ID GPL6885
Series (1)
GSE43034 Canonical Nlrp3 inflammasome activation links systemic age-related inflammation with functional decline

Data table header descriptions
ID_REF
VALUE Illumina GenomeStudio background subtracted and quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1838.104 0
ILMN_2721178 292.8892 0
ILMN_3033922 509.2472 0
ILMN_3092673 3239.653 0
ILMN_2816356 14.56255 0.06641604
ILMN_2808939 489.6957 0
ILMN_2634564 311.0059 0
ILMN_2737647 4.522962 0.2192982
ILMN_2734484 385.5058 0
ILMN_2952292 59.42021 0
ILMN_2699078 1.088044 0.339599
ILMN_1213681 186.7814 0
ILMN_2735413 -0.5713683 0.4223058
ILMN_2735415 -0.1436234 0.3922306
ILMN_2891688 570.7831 0
ILMN_2637698 1019.773 0
ILMN_2674228 104.5016 0
ILMN_2601546 8.269469 0.1441103
ILMN_1230831 10.65393 0.1052632
ILMN_2848071 18.84686 0.04135338

Total number of rows: 25697

Table truncated, full table size 727 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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