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Sample GSM1059043 Query DataSets for GSM1059043
Status Public on Apr 23, 2013
Title Control 1
Sample type RNA
Source name F9 cells
Organism Mus musculus
Characteristics treatment: control cells
cell line: F9
Treatment protocol Retinoic Acid
Growth protocol F9 cells culture condtion
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jan 02, 2013
Last update date Apr 23, 2013
Contact name Irene Aksoy
Organization name Stem Cell and Brain Research Institute
Street address 18 avenue du Doyen Lepine
City Lyon
ZIP/Postal code 69500
Country France
Platform ID GPL6103
Series (2)
GSE43232 Gene expression analysis of F9 cells double knock-down for Sox7 and Sox17
GSE43234 Sox7 and Sox17

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1238136 4.174749 0.3126521
ILMN_2721178 634.7533 0
ILMN_2773981 3835.262 0
ILMN_2771349 6205.649 0
ILMN_2634566 803.872 0
ILMN_2737647 -1.900192 0.4513382
ILMN_2744574 -1.000939 0.4282238
ILMN_2739275 101.3482 0.006082725
ILMN_2734484 552.5367 0
ILMN_2699078 -20.34479 0.9525548
ILMN_1213681 427.6537 0
ILMN_2735415 0.6445807 0.3905109
ILMN_1237980 22.44593 0.09002433
ILMN_3162350 35.05501 0.03527981
ILMN_2712923 51.38247 0.01824817
ILMN_2670314 135.0466 0.003649635
ILMN_2637698 1297.634 0
ILMN_2674228 412.735 0
ILMN_2438555 966.6601 0
ILMN_2601546 54.53324 0.01703163

Total number of rows: 24613

Table truncated, full table size 722 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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