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Sample GSM1059046 Query DataSets for GSM1059046
Status Public on Apr 23, 2013
Title Sox7/Sox17 KD 2
Sample type RNA
Source name F9 cells
Organism Mus musculus
Characteristics treatment: Sox7 and Sox17 knocked-down cells
cell line: F9
Treatment protocol Retinoic Acid
Growth protocol F9 cells culture condtion
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jan 02, 2013
Last update date Apr 23, 2013
Contact name Irene Aksoy
Organization name Stem Cell and Brain Research Institute
Street address 18 avenue du Doyen Lepine
City Lyon
ZIP/Postal code 69500
Country France
Platform ID GPL6103
Series (2)
GSE43232 Gene expression analysis of F9 cells double knock-down for Sox7 and Sox17
GSE43234 Sox7 and Sox17

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1238136 -12.48899 0.7749392
ILMN_2721178 538.9058 0
ILMN_2773981 4023.9 0
ILMN_2771349 6221.299 0
ILMN_2634566 953.1245 0
ILMN_2737647 -0.0270609 0.406326
ILMN_2744574 -1.946459 0.4562044
ILMN_2739275 165.5937 0.001216545
ILMN_2734484 529.3722 0
ILMN_2699078 -12.99868 0.7858881
ILMN_1213681 456.001 0
ILMN_2735415 0.7869924 0.3868613
ILMN_1237980 14.91838 0.1520681
ILMN_3162350 22.74444 0.08637469
ILMN_2712923 68.15102 0.00729927
ILMN_2670314 182.9372 0.001216545
ILMN_2637698 1283.246 0
ILMN_2674228 516.9501 0
ILMN_2438555 1297.086 0
ILMN_2601546 46.53814 0.01459854

Total number of rows: 24613

Table truncated, full table size 723 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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