GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM1059047 Query DataSets for GSM1059047
Status Public on Apr 23, 2013
Title Sox7/Sox17 KD 3
Sample type RNA
Source name F9 cells
Organism Mus musculus
Characteristics treatment: Sox7 and Sox17 knocked-down cells
cell line: F9
Treatment protocol Retinoic Acid
Growth protocol F9 cells culture condtion
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 3
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jan 02, 2013
Last update date Apr 23, 2013
Contact name Irene Aksoy
Organization name Stem Cell and Brain Research Institute
Street address 18 avenue du Doyen Lepine
City Lyon
ZIP/Postal code 69500
Country France
Platform ID GPL6103
Series (2)
GSE43232 Gene expression analysis of F9 cells double knock-down for Sox7 and Sox17
GSE43234 Sox7 and Sox17

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_1238136 -4.902203 0.5182482
ILMN_2721178 644.2426 0
ILMN_2773981 3908.069 0
ILMN_2771349 6608.285 0
ILMN_2634566 853.8975 0
ILMN_2737647 -5.482479 0.540146
ILMN_2744574 -3.59414 0.4805353
ILMN_2739275 169.3642 0.00243309
ILMN_2734484 616.337 0
ILMN_2699078 -16.34019 0.8832117
ILMN_1213681 483.2101 0
ILMN_2735415 15.52722 0.1423358
ILMN_1237980 25.40515 0.07907543
ILMN_3162350 27.30402 0.07055961
ILMN_2712923 50.97642 0.01581508
ILMN_2670314 203.2556 0
ILMN_2637698 1257.123 0
ILMN_2674228 667.0128 0
ILMN_2438555 1295.368 0
ILMN_2601546 35.24727 0.03771289

Total number of rows: 24613

Table truncated, full table size 723 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap