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Sample GSM1059048 Query DataSets for GSM1059048
Status Public on Apr 23, 2013
Title Sox17(-) 1
Sample type RNA
Source name ES cells
Organism Mus musculus
Characteristics treatment: control
cell line: KH2
Treatment protocol Doxycycline
Growth protocol mouse ES cells culture condtion
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 1
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
Submission date Jan 02, 2013
Last update date Apr 23, 2013
Contact name Irene Aksoy
Organization name Stem Cell and Brain Research Institute
Street address 18 avenue du Doyen Lepine
City Lyon
ZIP/Postal code 69500
Country France
Platform ID GPL6885
Series (2)
GSE43233 Gene expression analysis of V5 tagged Sox17 expressing ES cells
GSE43234 Sox7 and Sox17

Data table header descriptions
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1738.747 0
ILMN_2721178 432.5448 0
ILMN_3033922 482.0364 0
ILMN_3092673 1642.772 0
ILMN_2816356 126.6577 0
ILMN_2808939 901.823 0
ILMN_2634564 656.0275 0
ILMN_2737647 3.942176 0.2155388
ILMN_2734484 814.2765 0
ILMN_2952292 37.80399 0
ILMN_2699078 -7.033346 0.7807018
ILMN_1213681 382.1025 0
ILMN_2735413 6.177121 0.1654135
ILMN_2735415 11.87187 0.07518797
ILMN_2891688 533.4601 0
ILMN_2637698 921.0793 0
ILMN_2674228 511.3353 0
ILMN_2601546 3.514797 0.226817
ILMN_1230831 10.4567 0.08897243
ILMN_2848071 12.28541 0.07017544

Total number of rows: 25697

Table truncated, full table size 717 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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