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Sample GSM1059052 Query DataSets for GSM1059052
Status Public on Apr 23, 2013
Title Sox17(-) 5
Sample type RNA
 
Source name ES cells
Organism Mus musculus
Characteristics treatment: control
cell line: KH2
Treatment protocol Doxycycline
Growth protocol mouse ES cells culture condtion
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label Biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description Replicate 2
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jan 02, 2013
Last update date Apr 23, 2013
Contact name Irene Aksoy
E-mail(s) irene.aksoy@inserm.fr
Organization name Stem Cell and Brain Research Institute
Street address 18 avenue du Doyen Lepine
City Lyon
ZIP/Postal code 69500
Country France
 
Platform ID GPL6885
Series (2)
GSE43233 Gene expression analysis of V5 tagged Sox17 expressing ES cells
GSE43234 Sox7 and Sox17

Data table header descriptions
ID_REF
VALUE quantile normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2073.726 0
ILMN_2721178 501.838 0
ILMN_3033922 469.4768 0
ILMN_3092673 1919.678 0
ILMN_2816356 125.0793 0
ILMN_2808939 953.1559 0
ILMN_2634564 644.6661 0
ILMN_2737647 -3.802114 0.5764411
ILMN_2734484 696.5505 0
ILMN_2952292 34.28307 0
ILMN_2699078 10.28025 0.07894737
ILMN_1213681 453.0832 0
ILMN_2735413 0.7186064 0.3358396
ILMN_2735415 -0.005090913 0.3621554
ILMN_2891688 483.3519 0
ILMN_2637698 935.2842 0
ILMN_2674228 521.5362 0
ILMN_2601546 -4.392918 0.6152882
ILMN_1230831 -5.223663 0.6654136
ILMN_2848071 25.68097 0.00877193

Total number of rows: 25697

Table truncated, full table size 717 Kbytes.




Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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