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GEO accession:
Sample GSM106397
Query DataSets for GSM106397
Status
Public on Oct 24, 2006
Title
EdTx study_macrophages_LPS-treated_6h_rep3
Sample type
RNA
Source name
LPS-treated macrophages
Organism
Mus musculus
Characteristics
RAW 264.7 macrophages
Extracted molecule
total RNA
Label
Affymetrix
Description
RAW 264.7 macrophages were treated with LPS (1 ng/ml) for 6 hr - used as a control for low levels of LPS contamination of purified Edema toxin.
Data processing
GCOS
Submission date
Apr 24, 2006
Last update date
Apr 26, 2006
Contact name
Ashok K Chopra
E-mail(s)
achopra@utmb.edu
Phone
409-747-0573
Fax
409-747-6869
Organization name
University of Texas Medical Branch
Department
Microbiology & Immunology
Street address
301 University Blvd.
City
Galveston
State/province
TX
ZIP/Postal code
77555
Country
USA
Platform ID
GPL1261
Series (1)
GSE4712
Edema Toxin-treated Macrophage Study
Data table header descriptions
ID_REF
VALUE
Normalized signal value
ABS_CALL
Presence value (absent, marginally present, ot present)
DETECTION P-VALUE
Presence statistic
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
359.9
P
0.002023
AFFX-BioB-M_at
509.4
P
0.000258
AFFX-BioB-3_at
356.3
P
0.000169
AFFX-BioC-5_at
1161.7
P
0.00011
AFFX-BioC-3_at
1461.7
P
0.000044
AFFX-BioDn-5_at
1918.5
P
0.000052
AFFX-BioDn-3_at
6336.3
P
0.000297
AFFX-CreX-5_at
13151.8
P
0.000052
AFFX-CreX-3_at
16002.9
P
0.000044
AFFX-DapX-5_at
28.7
A
0.262827
AFFX-DapX-M_at
67.1
A
0.102165
AFFX-DapX-3_at
72.2
A
0.574038
AFFX-LysX-5_at
1452.7
P
0.000044
AFFX-LysX-M_at
2270.6
P
0.000044
AFFX-LysX-3_at
5876.5
P
0.000044
AFFX-PheX-5_at
3846.2
P
0.000044
AFFX-PheX-M_at
6176.4
P
0.000044
AFFX-PheX-3_at
7992
P
0.000044
AFFX-ThrX-5_at
97.1
A
0.216524
AFFX-ThrX-M_at
113.1
P
0.018281
Total number of rows:
45101
Table truncated, full table size
1217 Kbytes
.
Supplementary data files not provided
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