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GEO accession:
Sample GSM106400
Query DataSets for GSM106400
Status
Public on Oct 24, 2006
Title
EdTx study_macrophages_PA-treated_3h_rep2
Sample type
RNA
Source name
Protective antigen-treated macrophages
Organism
Mus musculus
Characteristics
RAW 264.7 macrophages
Extracted molecule
total RNA
Label
Affymetrix
Description
RAW 264.7 macrophages were treated with protective antigen (2.5 µg/ml) for 3 hr - used as a negative control to detect transcriptional responses to the binding moiety alone.
Data processing
GCOS
Submission date
Apr 24, 2006
Last update date
Apr 26, 2006
Contact name
Ashok K Chopra
E-mail(s)
achopra@utmb.edu
Phone
409-747-0573
Fax
409-747-6869
Organization name
University of Texas Medical Branch
Department
Microbiology & Immunology
Street address
301 University Blvd.
City
Galveston
State/province
TX
ZIP/Postal code
77555
Country
USA
Platform ID
GPL1261
Series (1)
GSE4712
Edema Toxin-treated Macrophage Study
Data table header descriptions
ID_REF
VALUE
Normalized signal value
ABS_CALL
Presence value (absent, marginally present, ot present)
DETECTION P-VALUE
Presence statistic
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
422.6
P
0.003212
AFFX-BioB-M_at
631.4
P
0.000581
AFFX-BioB-3_at
283.2
P
0.000258
AFFX-BioC-5_at
1366.5
P
0.000127
AFFX-BioC-3_at
1697.1
P
0.000044
AFFX-BioDn-5_at
2062.8
P
0.000044
AFFX-BioDn-3_at
6371.6
P
0.00011
AFFX-CreX-5_at
13969.8
P
0.000052
AFFX-CreX-3_at
17952.4
P
0.000044
AFFX-DapX-5_at
7.3
A
0.910522
AFFX-DapX-M_at
141.3
A
0.078002
AFFX-DapX-3_at
13.2
A
0.712257
AFFX-LysX-5_at
1374.8
P
0.000044
AFFX-LysX-M_at
2002.7
P
0.000044
AFFX-LysX-3_at
4564.3
P
0.000044
AFFX-PheX-5_at
5580
P
0.000044
AFFX-PheX-M_at
7131.6
P
0.000044
AFFX-PheX-3_at
7076.6
P
0.000044
AFFX-ThrX-5_at
121.5
A
0.195266
AFFX-ThrX-M_at
95.1
M
0.062929
Total number of rows:
45101
Table truncated, full table size
1221 Kbytes
.
Supplementary data files not provided
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